Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01501 and BL03206
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_01501___ssuB.1.5803.seq
# -bsequence dna-align/BL03206___ssuB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01501___ssuB-BL03206___ssuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01501___ssuB-BL03206___ssuB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01501___ssuB
# 2: BL03206___ssuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 830
# Identity: 539/830 (64.9%)
# Similarity: 539/830 (64.9%)
# Gaps: 124/830 (14.9%)
# Score: 1728.0
#
#
#=======================================
BSNT_01501___ 1 GTGGCTGTGACCATCA----GCATCAAAGAAAAGGCATTTG--------- 37
.||.||.| |||| |..|.||.|||||.|||||||
BL03206___ssu 1 ATGTCTTT----ATCAATTCGTGTGAATGAAAAAGCATTTGGAAAAGGCA 46
BSNT_01501___ 38 ---TT----CAAGAGGGCCGCAA------AAAC--ACGGTCTTAGAGAAC 72
|| ||||.|.||..||| ||.| |||||| ||.|||
BL03206___ssu 47 GCTTTAAAACAAGCGTGCTCCAAGACGTGAATCTTACGGTC---GAAAAC 93
BSNT_01501___ 73 ATAGAATTATCAATCGCACCAGGCGAATTTCTAACGCTTATCGGACCGAG 122
|||||||||.|.||..|.|||||.|||||
BL03206___ssu 94 ---------------------GGCGAATTTTTGACTGTCATCGGTCCGAG 122
BSNT_01501___ 123 CGGGTGTGGAAAAAGCACCCTGTTAAAGATTATTGCAGGGCTT------G 166
||||||.||||||||.||.||.|||||.||...|||.||.||| |
BL03206___ssu 123 CGGGTGCGGAAAAAGTACGCTCTTAAAAATCGCTGCCGGTCTTGACGGGG 172
BSNT_01501___ 167 ATTCTGAA-----------TATG-ACGGGAGTGTGGAAATTAACGGCCGC 204
|||.|||| .||| ||||.|| .|||||.||.|||
BL03206___ssu 173 ATTATGAAGGACGAATCAGCATGAACGGAAG---AGAAATCAAGGGC--- 216
BSNT_01501___ 205 AGCGTAACAGCTCCGGGTATTCAGCAAGGATTTATTTTTCAGGAACACCG 254
|||||.|||||||||||.||.||.||||||||.||.||
BL03206___ssu 217 ------------CCGGGGATTCAGCAAGGCTTCATCTTTCAGGAGCATCG 254
BSNT_01501___ 255 CCTCTTTCCTTGGCTGACTGTTGAGCAGAATATTGCAGCCGACTTGAATT 304
.||.|||||.|||.||||.||||||||.|||||.||.||.||.||.|...
BL03206___ssu 255 GCTTTTTCCATGGATGACGGTTGAGCAAAATATCGCCGCAGATTTAAGCC 304
BSNT_01501___ 305 TGAATGACCCAAAAGT-CAAACAAAAGGTGGATGAACTGATCGAGATTGT 353
||||.||.|||..||| |.|| ||||.||.||||||.||||.||.|..||
BL03206___ssu 305 TGAAAGAACCAGCAGTGCGAA-AAAAAGTCGATGAATTGATTGAAACGGT 353
BSNT_01501___ 354 CAGATTGAAAGGATCGGAAAAAGCA-TATCCGCGCGAGCTGTCAGGCGGC 402
..|..|||||||..||||.||| || ||.||||||||||||||.|||||.
BL03206___ssu 354 ACGGCTGAAAGGTGCGGAGAAA-CAGTACCCGCGCGAGCTGTCCGGCGGA 402
BSNT_01501___ 403 ATGTCACAAAGAGTAGCCATCGCCCGGGCCCTTCTGCGGGAGCCTGAG-- 450
|||||.||..|.||.||.||.|||.||||..|.||..|||||||||||
BL03206___ssu 403 ATGTCGCAGCGGGTCGCGATTGCCAGGGCTTTGCTCAGGGAGCCTGAGAT 452
BSNT_01501___ 451 -GTGCTGCTTTTAGATGAACCGTTTGGTGCACTCGACGCTTTTACAAGAA 499
.|||||||| ||||||||.||.|||||..|.|||||.|||||.||||
BL03206___ssu 453 TTTGCTGCTT---GATGAACCCTTCGGTGCCTTGGACGCCTTTACGAGAA 499
BSNT_01501___ 500 AACACCTGCAGGACGTGCTGCTGGATATATGGAGGAGGAAAAAAACA--A 547
|.||.||||||||.||.|||...||.||.||||| .|||||.||.| |
BL03206___ssu 500 AGCATCTGCAGGATGTACTGACAGACATTTGGAG--AGAAAAGAAGATGA 547
BSNT_01501___ 548 CGATGATTCTCGTGACTCATGATATAGATGAATCTGTTTATTTAGGAAAT 597
|||||||.||||||||.||.|||||.||.|||||.||.|||||||..||.
BL03206___ssu 548 CGATGATCCTCGTGACGCACGATATTGACGAATCGGTGTATTTAGCCAAC 597
BSNT_01501___ 598 GAGCTTGCGATCCTTAAGGCCAAACCGGGGAAAATCCATAAGCTGATGCC 647
..|.|.||.||.||||.|||.||.|||||||.||||||.||||||||.||
BL03206___ssu 598 CGGATCGCAATTCTTACGGCAAAGCCGGGGAGAATCCACAAGCTGATTCC 647
BSNT_01501___ 648 CATTCACCTGGCGTATCCGCGGAACCGGACGACTCCGGATTTCCAAGCGA 697
..|..|.|||.|.|.||||||.|.|.|.||..|.||.|.|||.|||.|.|
BL03206___ssu 648 GGTCGATCTGCCTTTTCCGCGCAGCAGAACATCGCCCGTTTTTCAAACAA 697
BSNT_01501___ 698 TCAGACAGAGAGTGCTGTCGGAATTCGAGAAAACAGA-------AGATTT 740
|.|||||.|..||||||...||.|||||||.|||.|| ||.|||
BL03206___ssu 698 TTAGACAAAAGGTGCTGAAAGAGTTCGAGACAACGGAAACATTCAGCTTT 747
BSNT_01501___ 741 GGAGTACGCA-GAAGGATCAGGGATATAG- 768
|| |||||.|||||.|| |.|
BL03206___ssu 748 --------CAGGAAGGTTCAGGAAT-TTGA 768
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