Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01501 and BL03206

See Amino acid alignment / Visit BSNT_01501 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_01501___ssuB.1.5803.seq
#    -bsequence dna-align/BL03206___ssuB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01501___ssuB-BL03206___ssuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01501___ssuB-BL03206___ssuB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01501___ssuB
# 2: BL03206___ssuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 830
# Identity:     539/830 (64.9%)
# Similarity:   539/830 (64.9%)
# Gaps:         124/830 (14.9%)
# Score: 1728.0
# 
#
#=======================================

BSNT_01501___      1 GTGGCTGTGACCATCA----GCATCAAAGAAAAGGCATTTG---------     37
                     .||.||.|    ||||    |..|.||.|||||.|||||||         
BL03206___ssu      1 ATGTCTTT----ATCAATTCGTGTGAATGAAAAAGCATTTGGAAAAGGCA     46

BSNT_01501___     38 ---TT----CAAGAGGGCCGCAA------AAAC--ACGGTCTTAGAGAAC     72
                        ||    ||||.|.||..|||      ||.|  ||||||   ||.|||
BL03206___ssu     47 GCTTTAAAACAAGCGTGCTCCAAGACGTGAATCTTACGGTC---GAAAAC     93

BSNT_01501___     73 ATAGAATTATCAATCGCACCAGGCGAATTTCTAACGCTTATCGGACCGAG    122
                                          |||||||||.|.||..|.|||||.|||||
BL03206___ssu     94 ---------------------GGCGAATTTTTGACTGTCATCGGTCCGAG    122

BSNT_01501___    123 CGGGTGTGGAAAAAGCACCCTGTTAAAGATTATTGCAGGGCTT------G    166
                     ||||||.||||||||.||.||.|||||.||...|||.||.|||      |
BL03206___ssu    123 CGGGTGCGGAAAAAGTACGCTCTTAAAAATCGCTGCCGGTCTTGACGGGG    172

BSNT_01501___    167 ATTCTGAA-----------TATG-ACGGGAGTGTGGAAATTAACGGCCGC    204
                     |||.||||           .||| ||||.||   .|||||.||.|||   
BL03206___ssu    173 ATTATGAAGGACGAATCAGCATGAACGGAAG---AGAAATCAAGGGC---    216

BSNT_01501___    205 AGCGTAACAGCTCCGGGTATTCAGCAAGGATTTATTTTTCAGGAACACCG    254
                                 |||||.|||||||||||.||.||.||||||||.||.||
BL03206___ssu    217 ------------CCGGGGATTCAGCAAGGCTTCATCTTTCAGGAGCATCG    254

BSNT_01501___    255 CCTCTTTCCTTGGCTGACTGTTGAGCAGAATATTGCAGCCGACTTGAATT    304
                     .||.|||||.|||.||||.||||||||.|||||.||.||.||.||.|...
BL03206___ssu    255 GCTTTTTCCATGGATGACGGTTGAGCAAAATATCGCCGCAGATTTAAGCC    304

BSNT_01501___    305 TGAATGACCCAAAAGT-CAAACAAAAGGTGGATGAACTGATCGAGATTGT    353
                     ||||.||.|||..||| |.|| ||||.||.||||||.||||.||.|..||
BL03206___ssu    305 TGAAAGAACCAGCAGTGCGAA-AAAAAGTCGATGAATTGATTGAAACGGT    353

BSNT_01501___    354 CAGATTGAAAGGATCGGAAAAAGCA-TATCCGCGCGAGCTGTCAGGCGGC    402
                     ..|..|||||||..||||.||| || ||.||||||||||||||.|||||.
BL03206___ssu    354 ACGGCTGAAAGGTGCGGAGAAA-CAGTACCCGCGCGAGCTGTCCGGCGGA    402

BSNT_01501___    403 ATGTCACAAAGAGTAGCCATCGCCCGGGCCCTTCTGCGGGAGCCTGAG--    450
                     |||||.||..|.||.||.||.|||.||||..|.||..|||||||||||  
BL03206___ssu    403 ATGTCGCAGCGGGTCGCGATTGCCAGGGCTTTGCTCAGGGAGCCTGAGAT    452

BSNT_01501___    451 -GTGCTGCTTTTAGATGAACCGTTTGGTGCACTCGACGCTTTTACAAGAA    499
                      .||||||||   ||||||||.||.|||||..|.|||||.|||||.||||
BL03206___ssu    453 TTTGCTGCTT---GATGAACCCTTCGGTGCCTTGGACGCCTTTACGAGAA    499

BSNT_01501___    500 AACACCTGCAGGACGTGCTGCTGGATATATGGAGGAGGAAAAAAACA--A    547
                     |.||.||||||||.||.|||...||.||.|||||  .|||||.||.|  |
BL03206___ssu    500 AGCATCTGCAGGATGTACTGACAGACATTTGGAG--AGAAAAGAAGATGA    547

BSNT_01501___    548 CGATGATTCTCGTGACTCATGATATAGATGAATCTGTTTATTTAGGAAAT    597
                     |||||||.||||||||.||.|||||.||.|||||.||.|||||||..||.
BL03206___ssu    548 CGATGATCCTCGTGACGCACGATATTGACGAATCGGTGTATTTAGCCAAC    597

BSNT_01501___    598 GAGCTTGCGATCCTTAAGGCCAAACCGGGGAAAATCCATAAGCTGATGCC    647
                     ..|.|.||.||.||||.|||.||.|||||||.||||||.||||||||.||
BL03206___ssu    598 CGGATCGCAATTCTTACGGCAAAGCCGGGGAGAATCCACAAGCTGATTCC    647

BSNT_01501___    648 CATTCACCTGGCGTATCCGCGGAACCGGACGACTCCGGATTTCCAAGCGA    697
                     ..|..|.|||.|.|.||||||.|.|.|.||..|.||.|.|||.|||.|.|
BL03206___ssu    648 GGTCGATCTGCCTTTTCCGCGCAGCAGAACATCGCCCGTTTTTCAAACAA    697

BSNT_01501___    698 TCAGACAGAGAGTGCTGTCGGAATTCGAGAAAACAGA-------AGATTT    740
                     |.|||||.|..||||||...||.|||||||.|||.||       ||.|||
BL03206___ssu    698 TTAGACAAAAGGTGCTGAAAGAGTTCGAGACAACGGAAACATTCAGCTTT    747

BSNT_01501___    741 GGAGTACGCA-GAAGGATCAGGGATATAG-    768
                             || |||||.|||||.|| |.| 
BL03206___ssu    748 --------CAGGAAGGTTCAGGAAT-TTGA    768


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