Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01504 and BL03204

See Amino acid alignment / Visit BSNT_01504 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_01504___ssuC.1.5803.seq
#    -bsequence dna-align/BL03204___ssuC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01504___ssuC-BL03204___ssuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01504___ssuC-BL03204___ssuC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01504___ssuC
# 2: BL03204___ssuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 889
# Identity:     584/889 (65.7%)
# Similarity:   584/889 (65.7%)
# Gaps:         110/889 (12.4%)
# Score: 1790.5
# 
#
#=======================================

BSNT_01504___      1 ATGATGA-----------AAGCAGAGGCTGCGGGCTCG---CTGCCCAAA     36
                     |||| ||           |||||       |...||||   |.|||.|||
BL03204___ssu      1 ATGA-GAGCTGTTTCATCAAGCA-------CCCCCTCGATCCAGCCGAAA     42

BSNT_01504___     37 ACGAATGCGGAAGCGGTGCGAAAAA---AGCCCGGAAGGAAGAGATACGG     83
                     ||         ||    |||.||||   ||.||||            |.|
BL03204___ssu     43 AC---------AG----GCGCAAAACTGAGACCGG------------CCG     67

BSNT_01504___     84 CTTT---------AT----GAAGGGGCTTTTACTGCCCGCTGTCA---TC    117
                     ||||         ||    ||||||..||.||.|.|||   ||||   |.
BL03204___ssu     68 CTTTTCGGCTGGCATGGGGGAAGGGATTTGTATTACCC---GTCATGTTG    114

BSNT_01504___    118 ATTGCCATCTGGCAGGTCATCGGCGGGC--TGGGGATTGTGTCCGCTACA    165
                     |||....|.||||||.|..|||  ||.|  |||.|.|..|.||....||.
BL03204___ssu    115 ATTTTATTATGGCAGCTTGTCG--GGTCATTGGAGCTCATATCAAAAACC    162

BSNT_01504___    166 GTGCTGCCTACACCTGTTACGAT-TGTT-CTGACCTTTAAGGAGCTTATT    213
                     |||||.||..|.||| ||| ||| |.|| ||.||.|||..|||.|||||.
BL03204___ssu    163 GTGCTTCCGGCTCCT-TTA-GATATATTGCTTACATTTCGGGATCTTATC    210

BSNT_01504___    214 TTGTCCGGCGAACTGTTCGGCCATCT--GCAAATCAGCATTTATCGGGCG    261
                     .|.||.||.||.||.|||...|||.|  ||  |||||||||.|.||.||.
BL03204___ssu    211 GTATCAGGAGAGCTTTTCACTCATTTAGGC--ATCAGCATTCAGCGCGCC    258

BSNT_01504___    262 GCGCTTGGTTTTTTGCTTGGCGCAGGGCTTGGATTGATGATCGGGATTTT    311
                     |||||.||.|||||.||.||.||.|||||.||..|..||.|.|||.||.|
BL03204___ssu    259 GCGCTCGGCTTTTTCCTGGGGGCCGGGCTCGGGCTCCTGCTGGGGCTTGT    308

BSNT_01504___    312 GGCCGGATTCTCCAAA----CGGACGGAGCTGTATCTTGATCCGTCGTTG    357
                     ...|||.||.||.|||    |.|| |||   .||.||.|||||.||..||
BL03204___ssu    309 AATCGGGTTTTCGAAAATTGCCGA-GGA---TTACCTCGATCCTTCTCTG    354

BSNT_01504___    358 CAAATGCTTAGAACCGTACCTCATCTGGCCGTCACGCCGCTGTTTATTTT    407
                     ||||||||.||||||||.||.|||||.||||||||||||||||||||.||
BL03204___ssu    355 CAAATGCTGAGAACCGTTCCGCATCTCGCCGTCACGCCGCTGTTTATCTT    404

BSNT_01504___    408 ATGGTTCGGATTTGACGAAGTATCTAAAATTTTGCTGATTGCGCTCGGTG    457
                     |||||||||.||.||.||..|.||.||..|..|..||||.||.||.||.|
BL03204___ssu    405 ATGGTTCGGTTTCGATGAGCTGTCAAAGGTGCTCTTGATCGCTCTTGGGG    454

BSNT_01504___    458 CCTTCTTTCCTGTCTATATCAATACGTTTAACGGCATCCGCGGGGTTGAC    507
                     |.|||||.||.||.||||||||.||.|||...||.|||.|.||.||.||.
BL03204___ssu    455 CTTTCTTCCCGGTATATATCAACACATTTTCAGGGATCAGGGGCGTCGAT    504

BSNT_01504___    508 GCGAAGCTGTTTGAAGTCGCCCGGGTGCTTGAATTTAAATGGCATCAGCA    557
                     .||||.|||||.||.||.||..||||..|.||.||..|.||||...||||
BL03204___ssu    505 TCGAAACTGTTCGATGTGGCGAGGGTATTGGAGTTCCATTGGCTGAAGCA    554

BSNT_01504___    558 AAT-ATCCAAAG-TGATATTGCCGGCAGCCCTGCCCAATATATTGCTAGG    605
                     ..| |  ||||| |.||..|.||.|||.|.||.||.||.||..|..||||
BL03204___ssu    555 GGTGA--CAAAGCTCATTCTTCCTGCATCGCTCCCGAACATTCTCTTAGG    602

BSNT_01504___    606 CATTCGCTTATCGCTCGGCATTGCATGGCTCGGGCTCGTTGTGGCAGAGC    655
                     |||.|||.|.|||||||||.|..|.|||||.||.||.|||||.||.||||
BL03204___ssu    603 CATCCGCCTGTCGCTCGGCGTATCGTGGCTGGGCCTTGTTGTTGCCGAGC    652

BSNT_01504___    656 TGATGGGCTCAAGCGCGGGAGTCGGCTATATGATCATGGATGCGAGACAG    705
                     |||||||.||||||||.|||||||||||||||||.||||||||.||||||
BL03204___ssu    653 TGATGGGATCAAGCGCTGGAGTCGGCTATATGATTATGGATGCCAGACAG    702

BSNT_01504___    706 TTTTCACAAACGAATAAAGTCTTTGCAGGGATTATCATTTTTGCAGTGGT    755
                     |||||.|||||..||||.||.||||..||||||.|.||||||||.|..||
BL03204___ssu    703 TTTTCGCAAACCGATAAGGTGTTTGTCGGGATTTTGATTTTTGCCGCCGT    752

BSNT_01504___    756 TGGAAAGCTGACGGATTCCTTCGTCAGGCTGCTTGAACGAAAGCTG--TT    803
                     .||.||||||||||||||.||||||||..|.||.|||..|||| ||  ||
BL03204___ssu    753 CGGCAAGCTGACGGATTCATTCGTCAGAATTCTGGAAAAAAAG-TGCCTT    801

BSNT_01504___    804 AAAG--TGGAGAAACAGCTACGAAGGA---------TAA    831
                        |  ||||||||||||||..|||||         |||
BL03204___ssu    802 ---GGCTGGAGAAACAGCTATCAAGGAAACAAAAAGTAA    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01504 and BL03204

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
