Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01515 and BL03195
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:00
# Commandline: needle
# -asequence dna-align/BSNT_01515___yhbB.1.5803.seq
# -bsequence dna-align/BL03195___yhbB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01515___yhbB-BL03195___yhbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01515___yhbB-BL03195___yhbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01515___yhbB
# 2: BL03195___yhbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1012
# Identity: 629/1012 (62.2%)
# Similarity: 629/1012 (62.2%)
# Gaps: 200/1012 (19.8%)
# Score: 1830.0
#
#
#=======================================
BSNT_01515___ 1 TTGAAGCACATTTTAGAACA-ATTAGCGGAGGAGCGGCTG-------GGC 42
|||| |||| ||.|.| |||.|||..||| |.|
BL03195___yhb 1 TTGA------------AACAGATCATC-GAGCAGCTCCTGAAAGCCAGAC 37
BSNT_01515___ 43 TTTC------TGGTTAACGGGCATGCTATGAGACA--------GGAGTCT 78
||| |..|||||||..||| ||||.||| ||
BL03195___yhb 38 -TTCAATACTTAATTAACGGCAATG--ATGAAACAAACTGGCGGG----- 79
BSNT_01515___ 79 CAAGTCGGAGACCTTAAAGTCATGGAGCGTAAGAAAAAGCTTCTGGAAAA 128
|.|.|||||...||.|||||||.||.||.|||...|.||||.|..||||
BL03195___yhb 80 -ATGCCGGAGGTTTTGAAGTCATTGAACGGAAGCGGAGGCTTTTTCAAAA 128
BSNT_01515___ 129 A--------------CGTAAAGTTGACATCATAAAAGCGAAAGC----AA 160
| |||.||| |.||..|||.||||| || ||
BL03195___yhb 129 ACGCGGCGTGCATATCGTGAAG--GCCAATATAGAAGCG---GCTGTAAA 173
BSNT_01515___ 161 AG-GCCGTGATTAATCATGTGCGGGTTGAGGATGACGGAACG--ACCTG- 206
|| || ||| ||.||||.||.|||||..|| ||.||
BL03195___yhb 174 AGAGC----ATT----------GGCTTGATGAAGACGGCGCGTCACATGT 209
BSNT_01515___ 207 --CCTTTCGTATACCATTCATTACGAATACGTGTGTAAGGAACAAGATGA 254
.||.|| |.||| |||..||.|||..||||.||.||....|||||
BL03195___yhb 210 GAACTATC--AAACC---CATACCGCATATTTGTGCAAAGACGGGGATGA 254
BSNT_01515___ 255 CAGCTTGTATATAGAAGAGCACATAGAGGAGCGAATGG--CTTTCCTGTA 302
.| |||||||.|||||.||.||.||.||..|||..| |||| ||||
BL03195___yhb 255 TA---TGTATATGGAAGAACATATGGAAGACAGAAACGCCCTTT--TGTA 299
BSNT_01515___ 303 TGATCACATTTTGATTAGTGA-TC--AGGAAATTGCGAAAAAGCCGGCTG 349
||||||.||..|.||||..|| || ||| ...|||| .|||||.|
BL03195___yhb 300 TGATCAGATGGTCATTAAAGACTCCGAGG-CCCTGCG-----TCCGGCCG 343
BSNT_01515___ 350 GATTTCATGAAGGGACCAGTATTATTGACT-ATTCTGAAGCTGAA----- 393
.| |||| || ||.||||..|||||
BL03195___yhb 344 CA--------------CAGT--------CTCATCCTGAGCCTGAAAACGG 371
BSNT_01515___ 394 -GAGGAAAGA-------GAAGCGTTTGGCAGGGCTTTTCAATACGATCGT 435
||.| |||| |||..|.|.||.|||||.||.|..||.||.||.
BL03195___yhb 372 CGATG-AAGATATGCGCGAATTGCTGGGAAGGGCGTTCCGCTATGACCGG 420
BSNT_01515___ 436 CTCGGCGCTGTCCAATATGCCGAGAAATTTTGGAACAAGCGCAATCCTGC 485
||.|.|||.||.|..|||||.||.|..|.||||||.||.||.||||||||
BL03195___yhb 421 CTTGCCGCGGTGCGCTATGCTGAAACGTATTGGAATAAACGAAATCCTGC 470
BSNT_01515___ 486 TTATAAAAA-TTTCAGCGATAACTGTACAAATTTTATTTCTCAGTGTCTT 534
||||||||| |||.| .||.||.||.|||||.||||||||.|||||
BL03195___yhb 471 TTATAAAAACTTTGA-AGACAATTGCACAAACTTTATTTCCCAGTG---- 515
BSNT_01515___ 535 CAT----GCAGGAGGCGCGCCGATGCGCGGTCATCCGAACAGGGGATCA- 579
||| ||.||||..||||||||||||||..||||||||||.|| ||
BL03195___yhb 516 CATAAGGGCCGGAGATGCGCCGATGCGCGGCTATCCGAACAGAGG--CAA 563
BSNT_01515___ 580 -GGCTGGTGGATGAAACAAAGC---TCATGGAGCTACAGCTGGACGGTGG 625
|||||||||||| ||||.| ||.|||||||||||||||||.||.|
BL03195___yhb 564 GGGCTGGTGGATG---CAAAACCATTCCTGGAGCTACAGCTGGACTGTCG 610
BSNT_01515___ 626 CGCACTCTATGAAAATGTATTTGTCGAATTCAAAGGCCGGACTGCGTGCG 675
|.||.||..|.|.||..|.||||..|.|||||||.|||||.||.||.|||
BL03195___yhb 611 CTCATTCGCTCAGAACCTTTTTGAAGCATTCAAAAGCCGGTCTCCGAGCG 660
BSNT_01515___ 676 GT------GCGGGTGAAATCAGCGGAAGAACTGATGCCG--GGCGATGTG 717
|| ||.|| |.|||.||||.||||| || ||||||||.
BL03195___yhb 661 GTTCAAAAGCCGG------CTGCGAAAGAGCTGAT--CGAAGGCGATGTC 702
BSNT_01515___ 718 ATTTGCTATGACTTCGAAGGAGACGGCCGCTTTAATCATACAACGATTG- 766
||.||||||||.||..|.|||||||||.|.||| .||.||| ||
BL03195___yhb 703 ATCTGCTATGATTTTAACGGAGACGGCAGATTT-----GACCACG--TGG 745
BSNT_01515___ 767 ---TCGTG---GCAAAGGACAAAGGCAATATGCCGCTTGTCAACGCCCAG 810
|.||| ||.|||||.|||.|||||||||||||.||.|||||.||.
BL03195___yhb 746 CCCTTGTGACAGCGAAGGATAAAAGCAATATGCCGCTGGTGAACGCGCAA 795
BSNT_01515___ 811 ACCTATGACAGCCGGATGAGGTATTGGTCATATGAGGATTCTACAGCATA 860
||..|.|||.|||||||||||||.|||||.||.||.|||||..|.||.||
BL03195___yhb 796 ACGCACGACTGCCGGATGAGGTACTGGTCTTACGAAGATTCGCCTGCTTA 845
BSNT_01515___ 861 CAC-GCAGTCAATACGATATGCCTTTTTTCATATCGTTGATGATACGACA 909
.|| .|| ||.||.||||||||.|||||||||||....||||||||||||
BL03195___yhb 846 TACTTCA-TCGATTCGATATGCGTTTTTTCATATATCAGATGATACGACA 894
BSNT_01515___ 910 AAAGAGTAA--- 918
|||..|.||
BL03195___yhb 895 AAATCGAAATGA 906
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