Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01515 and BL03195

See Amino acid alignment / Visit BSNT_01515 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:00
# Commandline: needle
#    -asequence dna-align/BSNT_01515___yhbB.1.5803.seq
#    -bsequence dna-align/BL03195___yhbB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01515___yhbB-BL03195___yhbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01515___yhbB-BL03195___yhbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01515___yhbB
# 2: BL03195___yhbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1012
# Identity:     629/1012 (62.2%)
# Similarity:   629/1012 (62.2%)
# Gaps:         200/1012 (19.8%)
# Score: 1830.0
# 
#
#=======================================

BSNT_01515___      1 TTGAAGCACATTTTAGAACA-ATTAGCGGAGGAGCGGCTG-------GGC     42
                     ||||            |||| ||.|.| |||.|||..|||       |.|
BL03195___yhb      1 TTGA------------AACAGATCATC-GAGCAGCTCCTGAAAGCCAGAC     37

BSNT_01515___     43 TTTC------TGGTTAACGGGCATGCTATGAGACA--------GGAGTCT     78
                      |||      |..|||||||..|||  ||||.|||        ||     
BL03195___yhb     38 -TTCAATACTTAATTAACGGCAATG--ATGAAACAAACTGGCGGG-----     79

BSNT_01515___     79 CAAGTCGGAGACCTTAAAGTCATGGAGCGTAAGAAAAAGCTTCTGGAAAA    128
                      |.|.|||||...||.|||||||.||.||.|||...|.||||.|..||||
BL03195___yhb     80 -ATGCCGGAGGTTTTGAAGTCATTGAACGGAAGCGGAGGCTTTTTCAAAA    128

BSNT_01515___    129 A--------------CGTAAAGTTGACATCATAAAAGCGAAAGC----AA    160
                     |              |||.|||  |.||..|||.|||||   ||    ||
BL03195___yhb    129 ACGCGGCGTGCATATCGTGAAG--GCCAATATAGAAGCG---GCTGTAAA    173

BSNT_01515___    161 AG-GCCGTGATTAATCATGTGCGGGTTGAGGATGACGGAACG--ACCTG-    206
                     || ||    |||          ||.||||.||.|||||..||  ||.|| 
BL03195___yhb    174 AGAGC----ATT----------GGCTTGATGAAGACGGCGCGTCACATGT    209

BSNT_01515___    207 --CCTTTCGTATACCATTCATTACGAATACGTGTGTAAGGAACAAGATGA    254
                       .||.||  |.|||   |||..||.|||..||||.||.||....|||||
BL03195___yhb    210 GAACTATC--AAACC---CATACCGCATATTTGTGCAAAGACGGGGATGA    254

BSNT_01515___    255 CAGCTTGTATATAGAAGAGCACATAGAGGAGCGAATGG--CTTTCCTGTA    302
                     .|   |||||||.|||||.||.||.||.||..|||..|  ||||  ||||
BL03195___yhb    255 TA---TGTATATGGAAGAACATATGGAAGACAGAAACGCCCTTT--TGTA    299

BSNT_01515___    303 TGATCACATTTTGATTAGTGA-TC--AGGAAATTGCGAAAAAGCCGGCTG    349
                     ||||||.||..|.||||..|| ||  ||| ...||||     .|||||.|
BL03195___yhb    300 TGATCAGATGGTCATTAAAGACTCCGAGG-CCCTGCG-----TCCGGCCG    343

BSNT_01515___    350 GATTTCATGAAGGGACCAGTATTATTGACT-ATTCTGAAGCTGAA-----    393
                     .|              ||||        || ||.||||..|||||     
BL03195___yhb    344 CA--------------CAGT--------CTCATCCTGAGCCTGAAAACGG    371

BSNT_01515___    394 -GAGGAAAGA-------GAAGCGTTTGGCAGGGCTTTTCAATACGATCGT    435
                      ||.| ||||       |||..|.|.||.|||||.||.|..||.||.||.
BL03195___yhb    372 CGATG-AAGATATGCGCGAATTGCTGGGAAGGGCGTTCCGCTATGACCGG    420

BSNT_01515___    436 CTCGGCGCTGTCCAATATGCCGAGAAATTTTGGAACAAGCGCAATCCTGC    485
                     ||.|.|||.||.|..|||||.||.|..|.||||||.||.||.||||||||
BL03195___yhb    421 CTTGCCGCGGTGCGCTATGCTGAAACGTATTGGAATAAACGAAATCCTGC    470

BSNT_01515___    486 TTATAAAAA-TTTCAGCGATAACTGTACAAATTTTATTTCTCAGTGTCTT    534
                     ||||||||| |||.| .||.||.||.|||||.||||||||.|||||    
BL03195___yhb    471 TTATAAAAACTTTGA-AGACAATTGCACAAACTTTATTTCCCAGTG----    515

BSNT_01515___    535 CAT----GCAGGAGGCGCGCCGATGCGCGGTCATCCGAACAGGGGATCA-    579
                     |||    ||.||||..||||||||||||||..||||||||||.||  || 
BL03195___yhb    516 CATAAGGGCCGGAGATGCGCCGATGCGCGGCTATCCGAACAGAGG--CAA    563

BSNT_01515___    580 -GGCTGGTGGATGAAACAAAGC---TCATGGAGCTACAGCTGGACGGTGG    625
                      ||||||||||||   ||||.|   ||.|||||||||||||||||.||.|
BL03195___yhb    564 GGGCTGGTGGATG---CAAAACCATTCCTGGAGCTACAGCTGGACTGTCG    610

BSNT_01515___    626 CGCACTCTATGAAAATGTATTTGTCGAATTCAAAGGCCGGACTGCGTGCG    675
                     |.||.||..|.|.||..|.||||..|.|||||||.|||||.||.||.|||
BL03195___yhb    611 CTCATTCGCTCAGAACCTTTTTGAAGCATTCAAAAGCCGGTCTCCGAGCG    660

BSNT_01515___    676 GT------GCGGGTGAAATCAGCGGAAGAACTGATGCCG--GGCGATGTG    717
                     ||      ||.||      |.|||.||||.|||||  ||  ||||||||.
BL03195___yhb    661 GTTCAAAAGCCGG------CTGCGAAAGAGCTGAT--CGAAGGCGATGTC    702

BSNT_01515___    718 ATTTGCTATGACTTCGAAGGAGACGGCCGCTTTAATCATACAACGATTG-    766
                     ||.||||||||.||..|.|||||||||.|.|||     .||.|||  || 
BL03195___yhb    703 ATCTGCTATGATTTTAACGGAGACGGCAGATTT-----GACCACG--TGG    745

BSNT_01515___    767 ---TCGTG---GCAAAGGACAAAGGCAATATGCCGCTTGTCAACGCCCAG    810
                        |.|||   ||.|||||.|||.|||||||||||||.||.|||||.||.
BL03195___yhb    746 CCCTTGTGACAGCGAAGGATAAAAGCAATATGCCGCTGGTGAACGCGCAA    795

BSNT_01515___    811 ACCTATGACAGCCGGATGAGGTATTGGTCATATGAGGATTCTACAGCATA    860
                     ||..|.|||.|||||||||||||.|||||.||.||.|||||..|.||.||
BL03195___yhb    796 ACGCACGACTGCCGGATGAGGTACTGGTCTTACGAAGATTCGCCTGCTTA    845

BSNT_01515___    861 CAC-GCAGTCAATACGATATGCCTTTTTTCATATCGTTGATGATACGACA    909
                     .|| .|| ||.||.||||||||.|||||||||||....||||||||||||
BL03195___yhb    846 TACTTCA-TCGATTCGATATGCGTTTTTTCATATATCAGATGATACGACA    894

BSNT_01515___    910 AAAGAGTAA---    918
                     |||..|.||   
BL03195___yhb    895 AAATCGAAATGA    906


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