Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01530 and BL03187
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_01530___yhcA.1.5803.seq
# -bsequence dna-align/BL03187___yhcA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01530___yhcA-BL03187___yhcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01530___yhcA-BL03187___yhcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01530___yhcA
# 2: BL03187___yhcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1640
# Identity: 1185/1640 (72.3%)
# Similarity: 1185/1640 (72.3%)
# Gaps: 91/1640 ( 5.5%)
# Score: 4100.5
#
#
#=======================================
BSNT_01530___ 1 ATGGCTACAGGCAAAGAAAAAAATACAAAAAGCCCTATGACATTGCTGAT 50
.||||| .|..||||||||..|.| ||||.||.||||.||
BL03187___yhc 1 GTGGCT----TCTCAGAAAAAAGGAAA--------TATGTCACTGCTTAT 38
BSNT_01530___ 51 TGTGCTAATGGCGGGTTTATTTTTGGCAATTCTAAACCAAACACTGCTTA 100
..|..|||||||.||.||.|||.||||.|||.||||||||||.|||||.|
BL03187___yhc 39 CATATTAATGGCCGGCTTGTTTCTGGCCATTTTAAACCAAACGCTGCTGA 88
BSNT_01530___ 101 ATGTTGCAATGCCGCACTTAATGACTGAATTTGGCGTAAGTGCAACGACG 150
||||.||.|||||.||..|.|||||.||.||....||.||.||.||.|||
BL03187___yhc 89 ATGTGGCGATGCCTCATCTCATGACAGAGTTCAATGTGAGCGCCACAACG 138
BSNT_01530___ 151 ATTCAGTGGCTGACAACAGGTTACATGCTTGTTAACGGTGTATTGATTCC 200
|||||.|||||||||||.||.||.||||||||.|||||.||.||||||||
BL03187___yhc 139 ATTCAATGGCTGACAACCGGATATATGCTTGTCAACGGCGTTTTGATTCC 188
BSNT_01530___ 201 GTTATCTGCTTTCCTGATTACACGATTTGGCCAGCGGAGTCTCTTTCT-- 248
.|||||.||.||.|||||||..||.||.|||...|||||.||.|||.|
BL03187___yhc 189 TTTATCAGCCTTTCTGATTATGCGGTTCGGCGGACGGAGCCTGTTTTTAA 238
BSNT_01530___ 249 CGTCGCGATG-TTTTGTTTTACGCTCGGTACGTTAGTCTGCGGTATCGCA 297
|| ||.||| |..|| ||||||..|||.|||.|..|.|||||.||..|.
BL03187___yhc 239 CG--GCCATGCTGCTG-TTTACGGCCGGAACGCTGATATGCGGAATTTCG 285
BSNT_01530___ 298 CCTAACTTCTCTACAATGCTGATCGGCCGTTTGATTCAGGCCGTGGGCGG 347
|||||.|||||.||.|||.|.|.|||.||..|.||||||||.||.|||||
BL03187___yhc 286 CCTAATTTCTCGACGATGTTAACCGGACGCCTCATTCAGGCAGTCGGCGG 335
BSNT_01530___ 348 AGGTAT-CTTGCAGCCGCTCGTTATGACAACCATTCTGTTAATTTTCCCG 396
|||.|| ||| |||||..|.||.|||||.||.|||||.||.||.||.||.
BL03187___yhc 336 AGGCATACTT-CAGCCTTTGGTCATGACGACGATTCTCTTTATCTTTCCT 384
BSNT_01530___ 397 CCTGAAAGCAGGGGGAAAGGAATGGGGATTTTCGGGCTAGCGATGATGTT 446
||.||||||.|.|||||||||||||||||.||.||.||.|||||||||||
BL03187___yhc 385 CCGGAAAGCCGCGGGAAAGGAATGGGGATCTTTGGCCTTGCGATGATGTT 434
BSNT_01530___ 447 TGCTCCAGCGGTCGGCCCGACTCTTTCCGGGTGGATTATTGAGCATTATA 496
||||||.||.|||||.||||||||.|||||.|||.|.|||||..|.||.|
BL03187___yhc 435 TGCTCCTGCTGTCGGTCCGACTCTATCCGGCTGGGTCATTGAAAACTACA 484
BSNT_01530___ 497 CATGGCGCATTATGTTTTACGGACTTGTGCCGATCGGCGCAATTGTTATC 546
..|||||.||.|||||||||.|.|||||||||.|.||.|..||.||.|||
BL03187___yhc 485 GCTGGCGGATCATGTTTTACAGCCTTGTGCCGGTTGGTGTCATCGTCATC 534
BSNT_01530___ 547 ATTGTGGCTTTCTTCATCTTTAAAAATATGGTGGAGCCGCAAAAAATCAA 596
|||.|.|.|||.|||.|.||||||||||||..|||.||..||||||||||
BL03187___yhc 535 ATTTTCGGTTTTTTCCTATTTAAAAATATGACGGAACCTAAAAAAATCAA 584
BSNT_01530___ 597 ACTCGATACTCTTGGCGCAATCCTCTCGATTGTCGGATTCGCCTCCTTAT 646
|.|.|||||....|||||.||.||.||..|.||||||||.||..|.||..
BL03187___yhc 585 ATTGGATACAGCAGGCGCGATTCTTTCAGTCGTCGGATTTGCGGCGTTGC 634
BSNT_01530___ 647 TATACGGAGTCAGTGAAGCCGGATCTGACGGCTGGACCGACCCGATTGTA 696
|.||.||.||.||.||||||||.||.|||||||||...||.|||||.|||
BL03187___yhc 635 TGTATGGCGTGAGCGAAGCCGGCTCAGACGGCTGGGATGATCCGATCGTA 684
BSNT_01530___ 697 TTGTCTACAGTTATTATCGGAGCCATTGCAATTGTTGCTTTTGTTGTTCA 746
.|.|||||||||.|.|||||.|..||.|..||||..||||||.|..|.||
BL03187___yhc 685 CTTTCTACAGTTGTGATCGGTGTAATCGGCATTGCCGCTTTTATCATCCA 734
BSNT_01530___ 747 GCAATTG----CGTCATGATGATCCGATGCTTGATTTCAGAGTGTTTAAA 792
|||.||| || .|.||.|||||||||||.|||||||||||.|||
BL03187___yhc 735 GCAGTTGAAATCG----AAAGAACCGATGCTTGACTTCAGAGTGTTCAAA 780
BSNT_01530___ 793 TATGACATTTTCTCACTCTCGAGTGTCATTAATATCATTATTACAGTGGC 842
||.||.||.||.|||||.||.||.||.||.||...|||.|||||.||.||
BL03187___yhc 781 TACGATATGTTTTCACTGTCAAGCGTGATCAACGCCATCATTACGGTTGC 830
BSNT_01530___ 843 ACTTTACACTGGTATGTTCCTTTTACCGATTTATCTGCAAAACCTGGTCG 892
..|.||..|.||.||||||||..|.|||||||||.|||||||||||||||
BL03187___yhc 831 TTTGTATGCCGGAATGTTCCTGATTCCGATTTATTTGCAAAACCTGGTCG 880
BSNT_01530___ 893 GCTTTACGGCGCTTCAATCCGGTCTGCTTCTGCTTCCGGGTGCGATCGTT 942
|.|||||.||||||||.||.||.||.|||.||||.|||||.||..||||.
BL03187___yhc 881 GTTTTACAGCGCTTCAGTCGGGGCTTCTTATGCTGCCGGGCGCACTCGTC 930
BSNT_01530___ 943 ATGCTGATTATGTCACCGATCTCAGGTATTTTGTTCGATAAATTCGGACC 992
|||||..|.|||||.|||||||||||.|||||.||.||||||.||||.||
BL03187___yhc 931 ATGCTTGTGATGTCGCCGATCTCAGGAATTTTATTTGATAAAGTCGGCCC 980
BSNT_01530___ 993 GAGACCGCTTGCGATTATCGGGCTTCTCG-TGACAGTGGTAACAACGTAT 1041
.||.|||||.||||||.|| ||.||.|.| |.||.||.||.||.||.||.
BL03187___yhc 981 AAGGCCGCTGGCGATTGTC-GGTTTATTGATCACCGTTGTGACGACCTAC 1029
BSNT_01530___ 1042 CAA--TAC-ACGCAATTGACAATTGATACACCATATACACACATCATGCT 1088
.|| ||| |||| |.||.||.|||||.||.||||...|||||.||||
BL03187___yhc 1030 GAATTTACGACGC---TTACGATCGATACGCCGTATATGTACATCGTGCT 1076
BSNT_01530___ 1089 GATCTATTCAATTCGTGCATTTGGTATGTCTCTCTTAATGATGCCAGTCA 1138
|||||||.|.|||||.||.|||||.||||||.|..|.||||||||..|.|
BL03187___yhc 1077 GATCTATGCGATTCGGGCGTTTGGGATGTCTATGCTGATGATGCCGATTA 1126
BSNT_01530___ 1139 TGACAGCCGGGATGAACCAGCTTCCTGC-CCGTCTGAACAGCCACGGAAC 1187
||||.|||||.|||||||||||||| || .|.|||.||||||||||||||
BL03187___yhc 1127 TGACTGCCGGCATGAACCAGCTTCC-GCAGCATCTAAACAGCCACGGAAC 1175
BSNT_01530___ 1188 GGCGATGAGTAACACGCTTCGCCAAATCAGCGGATCAATCGGAACAAGTT 1237
|||||||...||.||||||||||||||||||||.||.||||||||.||.|
BL03187___yhc 1176 GGCGATGTCGAATACGCTTCGCCAAATCAGCGGTTCGATCGGAACGAGCT 1225
BSNT_01530___ 1238 TAATTACGACGATTTATACAAACCGGACGACATTCCATTATTCACAAATT 1287
|.||.||||||||||||||.||.||.|||||||||||.|||.||..|||.
BL03187___yhc 1226 TGATCACGACGATTTATACGAATCGTACGACATTCCACTATGCATCAATG 1275
BSNT_01530___ 1288 GCAGATAAAACAAGCACGGCGGACCCGAACTTCCTCCATGCGTTCCAAAA 1337
||.|||.|.||||..|||||.||.||| ||.|..|||.| ||.|.
BL03187___yhc 1276 GCCGATCAGACAAATACGGCTGATCCG----TCATTTATGAG---CACAT 1318
BSNT_01530___ 1338 TGCAGT------TTCGAATTTAATGGTG-AAT--ATGAATGTGTCT-TAT 1377
|||||| ||| |.|.||..|.| ||| |||.||.|.||| |
BL03187___yhc 1319 TGCAGTCAACGATTC--AGTCAACCGCGCAATCGATGCATATATCTCT-- 1364
BSNT_01530___ 1378 GATACGGCGAA-------AACATATGTGTACTCACATATTTATAA----A 1416
|||| |||| ||.|||..|.|.||||| |.| |
BL03187___yhc 1365 -------CGAACAAGCACAACA-ATATGTCGTGAAATATT--TGACCGGA 1404
BSNT_01530___ 1417 CA--CGCATCACTCGATTCCAATGTCATGGGGATAAATGATGCCTTTATG 1464
|| |||| .|||.|.||.||.||||||||.||.|||||.||.||||||
BL03187___yhc 1405 CAGGCGCA--GCTCAACTCGAACGTCATGGGTATTAATGACGCGTTTATG 1452
BSNT_01530___ 1465 TGGGCAACCTTATTCTGTGTAGCA--GGTTTGATTTTAAGTATCTTCCTG 1512
|||||..||...|||||||| || |||.|..||.|.||..|.||..||
BL03187___yhc 1453 TGGGCGGCCGGGTTCTGTGT--CATCGGTCTCGTTCTCAGCCTGTTTTTG 1500
BSNT_01530___ 1513 CGTGACGTCAGAAAAGATAAATTGCGTAAGAAGAAAAAAG---AGGAGCT 1559
.|.||.|||||||||||.||..||||.|.||||||.|||| |||||||
BL03187___yhc 1501 AGGGATGTCAGAAAAGACAAGCTGCGCAGGAAGAACAAAGCGCAGGAGCT 1550
BSNT_01530___ 1560 TTCATTACTTCCTGCTCCAAAAGAAGCTAAGGAATCTTAA 1599
..||||.|||||.|||||.||||||||.||.|||||||||
BL03187___yhc 1551 GACATTGCTTCCGGCTCCTAAAGAAGCGAAAGAATCTTAA 1590
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