Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01530 and BL03187

See Amino acid alignment / Visit BSNT_01530 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_01530___yhcA.1.5803.seq
#    -bsequence dna-align/BL03187___yhcA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01530___yhcA-BL03187___yhcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01530___yhcA-BL03187___yhcA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01530___yhcA
# 2: BL03187___yhcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1640
# Identity:    1185/1640 (72.3%)
# Similarity:  1185/1640 (72.3%)
# Gaps:          91/1640 ( 5.5%)
# Score: 4100.5
# 
#
#=======================================

BSNT_01530___      1 ATGGCTACAGGCAAAGAAAAAAATACAAAAAGCCCTATGACATTGCTGAT     50
                     .|||||    .|..||||||||..|.|        ||||.||.||||.||
BL03187___yhc      1 GTGGCT----TCTCAGAAAAAAGGAAA--------TATGTCACTGCTTAT     38

BSNT_01530___     51 TGTGCTAATGGCGGGTTTATTTTTGGCAATTCTAAACCAAACACTGCTTA    100
                     ..|..|||||||.||.||.|||.||||.|||.||||||||||.|||||.|
BL03187___yhc     39 CATATTAATGGCCGGCTTGTTTCTGGCCATTTTAAACCAAACGCTGCTGA     88

BSNT_01530___    101 ATGTTGCAATGCCGCACTTAATGACTGAATTTGGCGTAAGTGCAACGACG    150
                     ||||.||.|||||.||..|.|||||.||.||....||.||.||.||.|||
BL03187___yhc     89 ATGTGGCGATGCCTCATCTCATGACAGAGTTCAATGTGAGCGCCACAACG    138

BSNT_01530___    151 ATTCAGTGGCTGACAACAGGTTACATGCTTGTTAACGGTGTATTGATTCC    200
                     |||||.|||||||||||.||.||.||||||||.|||||.||.||||||||
BL03187___yhc    139 ATTCAATGGCTGACAACCGGATATATGCTTGTCAACGGCGTTTTGATTCC    188

BSNT_01530___    201 GTTATCTGCTTTCCTGATTACACGATTTGGCCAGCGGAGTCTCTTTCT--    248
                     .|||||.||.||.|||||||..||.||.|||...|||||.||.|||.|  
BL03187___yhc    189 TTTATCAGCCTTTCTGATTATGCGGTTCGGCGGACGGAGCCTGTTTTTAA    238

BSNT_01530___    249 CGTCGCGATG-TTTTGTTTTACGCTCGGTACGTTAGTCTGCGGTATCGCA    297
                     ||  ||.||| |..|| ||||||..|||.|||.|..|.|||||.||..|.
BL03187___yhc    239 CG--GCCATGCTGCTG-TTTACGGCCGGAACGCTGATATGCGGAATTTCG    285

BSNT_01530___    298 CCTAACTTCTCTACAATGCTGATCGGCCGTTTGATTCAGGCCGTGGGCGG    347
                     |||||.|||||.||.|||.|.|.|||.||..|.||||||||.||.|||||
BL03187___yhc    286 CCTAATTTCTCGACGATGTTAACCGGACGCCTCATTCAGGCAGTCGGCGG    335

BSNT_01530___    348 AGGTAT-CTTGCAGCCGCTCGTTATGACAACCATTCTGTTAATTTTCCCG    396
                     |||.|| ||| |||||..|.||.|||||.||.|||||.||.||.||.||.
BL03187___yhc    336 AGGCATACTT-CAGCCTTTGGTCATGACGACGATTCTCTTTATCTTTCCT    384

BSNT_01530___    397 CCTGAAAGCAGGGGGAAAGGAATGGGGATTTTCGGGCTAGCGATGATGTT    446
                     ||.||||||.|.|||||||||||||||||.||.||.||.|||||||||||
BL03187___yhc    385 CCGGAAAGCCGCGGGAAAGGAATGGGGATCTTTGGCCTTGCGATGATGTT    434

BSNT_01530___    447 TGCTCCAGCGGTCGGCCCGACTCTTTCCGGGTGGATTATTGAGCATTATA    496
                     ||||||.||.|||||.||||||||.|||||.|||.|.|||||..|.||.|
BL03187___yhc    435 TGCTCCTGCTGTCGGTCCGACTCTATCCGGCTGGGTCATTGAAAACTACA    484

BSNT_01530___    497 CATGGCGCATTATGTTTTACGGACTTGTGCCGATCGGCGCAATTGTTATC    546
                     ..|||||.||.|||||||||.|.|||||||||.|.||.|..||.||.|||
BL03187___yhc    485 GCTGGCGGATCATGTTTTACAGCCTTGTGCCGGTTGGTGTCATCGTCATC    534

BSNT_01530___    547 ATTGTGGCTTTCTTCATCTTTAAAAATATGGTGGAGCCGCAAAAAATCAA    596
                     |||.|.|.|||.|||.|.||||||||||||..|||.||..||||||||||
BL03187___yhc    535 ATTTTCGGTTTTTTCCTATTTAAAAATATGACGGAACCTAAAAAAATCAA    584

BSNT_01530___    597 ACTCGATACTCTTGGCGCAATCCTCTCGATTGTCGGATTCGCCTCCTTAT    646
                     |.|.|||||....|||||.||.||.||..|.||||||||.||..|.||..
BL03187___yhc    585 ATTGGATACAGCAGGCGCGATTCTTTCAGTCGTCGGATTTGCGGCGTTGC    634

BSNT_01530___    647 TATACGGAGTCAGTGAAGCCGGATCTGACGGCTGGACCGACCCGATTGTA    696
                     |.||.||.||.||.||||||||.||.|||||||||...||.|||||.|||
BL03187___yhc    635 TGTATGGCGTGAGCGAAGCCGGCTCAGACGGCTGGGATGATCCGATCGTA    684

BSNT_01530___    697 TTGTCTACAGTTATTATCGGAGCCATTGCAATTGTTGCTTTTGTTGTTCA    746
                     .|.|||||||||.|.|||||.|..||.|..||||..||||||.|..|.||
BL03187___yhc    685 CTTTCTACAGTTGTGATCGGTGTAATCGGCATTGCCGCTTTTATCATCCA    734

BSNT_01530___    747 GCAATTG----CGTCATGATGATCCGATGCTTGATTTCAGAGTGTTTAAA    792
                     |||.|||    ||    .|.||.|||||||||||.|||||||||||.|||
BL03187___yhc    735 GCAGTTGAAATCG----AAAGAACCGATGCTTGACTTCAGAGTGTTCAAA    780

BSNT_01530___    793 TATGACATTTTCTCACTCTCGAGTGTCATTAATATCATTATTACAGTGGC    842
                     ||.||.||.||.|||||.||.||.||.||.||...|||.|||||.||.||
BL03187___yhc    781 TACGATATGTTTTCACTGTCAAGCGTGATCAACGCCATCATTACGGTTGC    830

BSNT_01530___    843 ACTTTACACTGGTATGTTCCTTTTACCGATTTATCTGCAAAACCTGGTCG    892
                     ..|.||..|.||.||||||||..|.|||||||||.|||||||||||||||
BL03187___yhc    831 TTTGTATGCCGGAATGTTCCTGATTCCGATTTATTTGCAAAACCTGGTCG    880

BSNT_01530___    893 GCTTTACGGCGCTTCAATCCGGTCTGCTTCTGCTTCCGGGTGCGATCGTT    942
                     |.|||||.||||||||.||.||.||.|||.||||.|||||.||..||||.
BL03187___yhc    881 GTTTTACAGCGCTTCAGTCGGGGCTTCTTATGCTGCCGGGCGCACTCGTC    930

BSNT_01530___    943 ATGCTGATTATGTCACCGATCTCAGGTATTTTGTTCGATAAATTCGGACC    992
                     |||||..|.|||||.|||||||||||.|||||.||.||||||.||||.||
BL03187___yhc    931 ATGCTTGTGATGTCGCCGATCTCAGGAATTTTATTTGATAAAGTCGGCCC    980

BSNT_01530___    993 GAGACCGCTTGCGATTATCGGGCTTCTCG-TGACAGTGGTAACAACGTAT   1041
                     .||.|||||.||||||.|| ||.||.|.| |.||.||.||.||.||.||.
BL03187___yhc    981 AAGGCCGCTGGCGATTGTC-GGTTTATTGATCACCGTTGTGACGACCTAC   1029

BSNT_01530___   1042 CAA--TAC-ACGCAATTGACAATTGATACACCATATACACACATCATGCT   1088
                     .||  ||| ||||   |.||.||.|||||.||.||||...|||||.||||
BL03187___yhc   1030 GAATTTACGACGC---TTACGATCGATACGCCGTATATGTACATCGTGCT   1076

BSNT_01530___   1089 GATCTATTCAATTCGTGCATTTGGTATGTCTCTCTTAATGATGCCAGTCA   1138
                     |||||||.|.|||||.||.|||||.||||||.|..|.||||||||..|.|
BL03187___yhc   1077 GATCTATGCGATTCGGGCGTTTGGGATGTCTATGCTGATGATGCCGATTA   1126

BSNT_01530___   1139 TGACAGCCGGGATGAACCAGCTTCCTGC-CCGTCTGAACAGCCACGGAAC   1187
                     ||||.|||||.|||||||||||||| || .|.|||.||||||||||||||
BL03187___yhc   1127 TGACTGCCGGCATGAACCAGCTTCC-GCAGCATCTAAACAGCCACGGAAC   1175

BSNT_01530___   1188 GGCGATGAGTAACACGCTTCGCCAAATCAGCGGATCAATCGGAACAAGTT   1237
                     |||||||...||.||||||||||||||||||||.||.||||||||.||.|
BL03187___yhc   1176 GGCGATGTCGAATACGCTTCGCCAAATCAGCGGTTCGATCGGAACGAGCT   1225

BSNT_01530___   1238 TAATTACGACGATTTATACAAACCGGACGACATTCCATTATTCACAAATT   1287
                     |.||.||||||||||||||.||.||.|||||||||||.|||.||..|||.
BL03187___yhc   1226 TGATCACGACGATTTATACGAATCGTACGACATTCCACTATGCATCAATG   1275

BSNT_01530___   1288 GCAGATAAAACAAGCACGGCGGACCCGAACTTCCTCCATGCGTTCCAAAA   1337
                     ||.|||.|.||||..|||||.||.|||    ||.|..|||.|   ||.|.
BL03187___yhc   1276 GCCGATCAGACAAATACGGCTGATCCG----TCATTTATGAG---CACAT   1318

BSNT_01530___   1338 TGCAGT------TTCGAATTTAATGGTG-AAT--ATGAATGTGTCT-TAT   1377
                     ||||||      |||  |.|.||..|.| |||  |||.||.|.||| |  
BL03187___yhc   1319 TGCAGTCAACGATTC--AGTCAACCGCGCAATCGATGCATATATCTCT--   1364

BSNT_01530___   1378 GATACGGCGAA-------AACATATGTGTACTCACATATTTATAA----A   1416
                            ||||       |||| ||.|||..|.|.|||||  |.|    |
BL03187___yhc   1365 -------CGAACAAGCACAACA-ATATGTCGTGAAATATT--TGACCGGA   1404

BSNT_01530___   1417 CA--CGCATCACTCGATTCCAATGTCATGGGGATAAATGATGCCTTTATG   1464
                     ||  ||||  .|||.|.||.||.||||||||.||.|||||.||.||||||
BL03187___yhc   1405 CAGGCGCA--GCTCAACTCGAACGTCATGGGTATTAATGACGCGTTTATG   1452

BSNT_01530___   1465 TGGGCAACCTTATTCTGTGTAGCA--GGTTTGATTTTAAGTATCTTCCTG   1512
                     |||||..||...||||||||  ||  |||.|..||.|.||..|.||..||
BL03187___yhc   1453 TGGGCGGCCGGGTTCTGTGT--CATCGGTCTCGTTCTCAGCCTGTTTTTG   1500

BSNT_01530___   1513 CGTGACGTCAGAAAAGATAAATTGCGTAAGAAGAAAAAAG---AGGAGCT   1559
                     .|.||.|||||||||||.||..||||.|.||||||.||||   |||||||
BL03187___yhc   1501 AGGGATGTCAGAAAAGACAAGCTGCGCAGGAAGAACAAAGCGCAGGAGCT   1550

BSNT_01530___   1560 TTCATTACTTCCTGCTCCAAAAGAAGCTAAGGAATCTTAA   1599
                     ..||||.|||||.|||||.||||||||.||.|||||||||
BL03187___yhc   1551 GACATTGCTTCCGGCTCCTAAAGAAGCGAAAGAATCTTAA   1590


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