Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01537 and BL03183

See Amino acid alignment / Visit BSNT_01537 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_01537___yhcH.1.5803.seq
#    -bsequence dna-align/BL03183___yhcH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01537___yhcH-BL03183___yhcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01537___yhcH-BL03183___yhcH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01537___yhcH
# 2: BL03183___yhcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 980
# Identity:     657/980 (67.0%)
# Similarity:   657/980 (67.0%)
# Gaps:         118/980 (12.0%)
# Score: 2073.5
# 
#
#=======================================

BSNT_01537___      1 ATGAAAACAGTGTTGGAATTGAAAAACGTGACTAAAAAC-ATCAGAGGCC     49
                     .||.|||||.|.||||||||.|||||.|| |..|||||| |||||.||..
BL03183___yhc      1 TTGGAAACACTTTTGGAATTAAAAAATGT-ATCAAAAACGATCAGGGGGA     49

BSNT_01537___     50 GAACGATCATTAATGATCTCAGTTTT-ACGATTCGTGAAGGCGAGGTATT     98
                     .||.||||||..|.|...|.|||||| ||| |.||.|.|||||||.||||
BL03183___yhc     50 AAAAGATCATCGAGGGCTTGAGTTTTGACG-TGCGGGCAGGCGAGATATT     98

BSNT_01537___     99 CGGTTTTTTAGGACCAAACGGAGCGGGGAAAACGACAACCATCCGGATGA    148
                     |||.||..|.||.||.|||||.||.||.||||||||.||.||||||||||
BL03183___yhc     99 CGGCTTCCTGGGGCCGAACGGCGCCGGAAAAACGACGACGATCCGGATGA    148

BSNT_01537___    149 TGGTGGGGTTAATGAAGC--TGTCGAAAGGTGATGTCCTCATTTGCGGCC    196
                     |.||.||....||| |||  |..|| ..|||||..||..|.|.|||||| 
BL03183___yhc    149 TTGTCGGACATATG-AGCATTACCG-CCGGTGAAATCGCCGTGTGCGGC-    195

BSNT_01537___    197 AATCAATTACG--AAAGAA---TATGCCAAGGCGATTAA--GCATATTGG    239
                      .|||   .||  ||||||   |.||..|||||  |..|  ||||||.||
BL03183___yhc    196 -GTCA---GCGTAAAAGAAAACTTTGAAAAGGC--TGCACGGCATATCGG    239

BSNT_01537___    240 AGCGATCGTTGAGAATCCCGAGCTGTATAAATTTTTGAGCGGATATAAAA    289
                     ||||||||||||.||.||.|||||.|||||||||||.|..||.||..|||
BL03183___yhc    240 AGCGATCGTTGAAAACCCGGAGCTTTATAAATTTTTAACGGGCTACCAAA    289

BSNT_01537___    290 ATCTCCAGCAATACGCAAGGATGGTCAAGGGTGTCACGAAGGAAAAAATT    339
                     |.||.|||||||||||..|.|||...||.||.||.|||||..|.||||||
BL03183___yhc    290 ACCTTCAGCAATACGCGCGCATGACGAAAGGCGTGACGAAAAAGAAAATT    339

BSNT_01537___    340 GATGAAGTTGTTGAACTGGTCGGTTTAACAGACAGAATCCACGACAAGGT    389
                     ||.|||.|.||.||.||.|||||.||.|.|.||||.|||.||||||||||
BL03183___yhc    340 GACGAAATCGTCGAGCTCGTCGGATTGAAAAACAGGATCAACGACAAGGT    389

BSNT_01537___    390 GAAAACATATTCTCTGGGGATGAGACAGCGTCTTGGCTTGGCACAATGCC    439
                     .|||||.|||||..|.||.||||||||..|.||||||.|.||.|||.|||
BL03183___yhc    390 CAAAACGTATTCGTTAGGAATGAGACAAAGGCTTGGCCTTGCCCAAAGCC    439

BSNT_01537___    440 TTCTGCACGATCCGAAAG-TGCTGATTTTGGATGAACCGACAAACGGCCT    488
                     ||.|||||||||| |||| ||.|||||.|.|||||.|||||.|||||.||
BL03183___yhc    440 TTTTGCACGATCC-AAAGCTGTTGATTCTCGATGAGCCGACGAACGGGCT    488

BSNT_01537___    489 TGATCCGGCGGGGATCAGAGAAATCAGAGATCATTTAAAGAAGCTGACCC    538
                     |||||||||.||.|||.|.||||||.|.||..||||||..||||||||..
BL03183___yhc    489 TGATCCGGCAGGTATCCGGGAAATCCGTGACTATTTAAGAAAGCTGACGA    538

BSNT_01537___    539 GAGAAAGAGGAATGGCTGTCATCGTTTCAAGCCACCTGCTGTCAGAAATG    588
                     ||||||..||||||||.|||||||||||||||||||||||.|||||||||
BL03183___yhc    539 GAGAAAAGGGAATGGCGGTCATCGTTTCAAGCCACCTGCTTTCAGAAATG    588

BSNT_01537___    589 GAACTGATGTGTGATCGAATTGCGATTCTGCAAAAAGGAAAGCTGATCGA    638
                     ||.||||||||.||..|.||.||.|||.|.|||||.||||||||....||
BL03183___yhc    589 GAGCTGATGTGCGACAGGATCGCCATTATTCAAAACGGAAAGCTCCGGGA    638

BSNT_01537___    639 TATTCAAAATGT--------------------AAAAGATG----AAAACA    664
                     ||||||..||||                    |.||||.|    |..|.|
BL03183___yhc    639 TATTCAGCATGTGCACGGACCCGCTCGGGATGAGAAGAAGCGCTATTATA    688

BSNT_01537___    665 TTGATGAGAACGATACATATTTCTTCCAGGTTGAGCAGCCGAATGAAGCC    714
                     ||.|.|.|.||||.||         |||||.| ..||..||  .|||||.
BL03183___yhc    689 TTCAAGCGGACGACAC---------CCAGGCT-CTCACACG--GGAAGCG    726

BSNT_01537___    715 GCTGCTGTTTTAAATCAGTACGAT-----TTGCTGA---GTAAGACAAAT    756
                     ||||||       .||||.|.|.|     |||..||   |.|||.|    
BL03183___yhc    727 GCTGCT-------TTCAGAAAGGTGAAGGTTGACGAAGCGGAAGGC----    765

BSNT_01537___    757 GGTGTAGA-------AATCAAACTGGCTAAAGACGAAGTCCCTGCGGTTA    799
                     ||..||||       |.||||       ||.||.|||||.||||     |
BL03183___yhc    766 GGGATAGAGCTCAGCATTCAA-------AAGGATGAAGTGCCTG-----A    803

BSNT_01537___    800 TTGAATT----GCTGGTGATGCAGCAAATCCGTATT------TATGAGGT    839
                     ||..|||    .||  |||  ||| |.|.|.||.||      |||||.||
BL03183___yhc    804 TTTGATTAAACACT--TGA--CAG-ACAGCGGTGTTCGCTTATATGAAGT    848

BSNT_01537___    840 CAAGGTTAT-AACAAAATCATTAGAGGACCGTTTCTTAGAAATGACAGGT    888
                     .||||.|.| ||| |||||..|.||.|||||.|||.|.|||||.||.|..
BL03183___yhc    849 GAAGGCTGTGAAC-AAATCGCTGGAAGACCGATTCCTGGAAATCACCGCA    897

BSNT_01537___    889 GAAACAAAAGAGGAGGTTCAGCATGCTTAA    918
                     ||   .||.|||||.|.||||||||.||||
BL03183___yhc    898 GA---TAAGGAGGAAGCTCAGCATGTTTAA    924


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