Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01538 and BL03182
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_01538___yhcI.1.5803.seq
# -bsequence dna-align/BL03182___yhcI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01538___yhcI-BL03182___yhcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01538___yhcI-BL03182___yhcI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01538___yhcI
# 2: BL03182___yhcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1044
# Identity: 619/1044 (59.3%)
# Similarity: 619/1044 (59.3%)
# Gaps: 204/1044 (19.5%)
# Score: 1586.5
#
#
#=======================================
BSNT_01538___ 1 ATGCTTAATTTGAT-TTATAATGAGTGGCTCAAAATTTTCAGCCGTGCCG 49
|||.|||||.|.|| .|| |||||.|||.||||||||||.|..||....|
BL03182___yhc 1 ATGTTTAATCTCATCGTA-AATGAATGGATCAAAATTTTTAATCGAAAAG 49
BSNT_01538___ 50 GAACATGGGTGATGATCGGAATTCTG----GGGCTGACAATGGTTGGATT 95
|.||||..||.||||||||||||.|| ..||||.||..||
BL03182___yhc 50 GCACATACGTCATGATCGGAATTTTGCTGTTAGCTGTCATCGG------- 92
BSNT_01538___ 96 TGCATTTTTGGCGAATCATTTTTCT---------GCT-GGTGAATCAAAT 135
|| |.|||| |||| |.| ||.||..||.|
BL03182___yhc 93 -GC----TGGGCG--------TTCTCACAAAGACGATCGGAGAGACAGA- 128
BSNT_01538___ 136 TCCCATTGGAAACAAGAACTTCAAGCACAAAACGCCGAATT--------- 176
||| |||||.|.|||..| |||| .|||||
BL03182___yhc 129 --CCA----AAACACGGACTGGA-----AAAA---GGAATTGGCGCAGGA 164
BSNT_01538___ 177 AAAGAAAGAAATCAAAGAA------------------GATCCTTCACT-- 206
|||.||.||.||.||.||| .||||..||||
BL03182___yhc 165 AAATAAGGACATGAAGGAACAGCTTAAAGGGAACAGCAATCCAACACTTG 214
BSNT_01538___ 207 -GAAAGATGGGTATAAAGAAACAATCACACTCAACGACTATCGCATCGAG 255
.|||.|| |||.||.|..|.|||.||.|.||.||.|||||.|||.||
BL03182___yhc 215 AAAAAAAT---TATGAACAGTCGATCGCAATTAATGAGTATCGAATCAAG 261
BSNT_01538___ 256 CATAATATCCCTAGTGACACGGG--CTATAC-GGTATGGTCTTATGTAAC 302
||..||.|.|| |..|.|.||| .|||.| |.|.| ||||| |.|
BL03182___yhc 262 CACGATTTACC--GGCAGATGGGGATTATTCAGCTCT-GTCTT---TCA- 304
BSNT_01538___ 303 GGATTCAGCAAACTTTAC---------CATC---CTTACCGGTCTGTTTA 340
|||||.| ||| |||| ||..|||||.||||
BL03182___yhc 305 ----TCAGCGA----TACGAGCGGGCTCATCTCGCTCGCCGGTTTGTT-- 344
BSNT_01538___ 341 CTATTATCA---TCGCGGCCGGAATTGTCGCGAACGAATTTAATTGGGGA 387
|.|.|||| |.|||||.|||||.||.|||||.|||||.|..||||||
BL03182___yhc 345 -TGTAATCACGGTGGCGGCGGGAATCGTTGCGAATGAATTCAGCTGGGGA 393
BSNT_01538___ 388 ACGATTAAGCTATTAATGATTCGGCCGCTCAGTCGTTTTCAAATTTTGAT 437
|||.|.|||||..|..|.||..|||||.||||.||.|||.||||..||.|
BL03182___yhc 394 ACGGTGAAGCTGCTTGTCATCAGGCCGATCAGCCGCTTTAAAATCCTGCT 443
BSNT_01538___ 438 GTCCAAATATATTACAGTTCTCCTGTT----TGGGCTCCTGTTGCTGTTG 483
|.|.||||||.||||.||.||.||.|| |.|||| |||||.||.
BL03182___yhc 444 GGCAAAATATTTTACGGTCCTGCTTTTCGCATTGGCT----TTGCTTTTC 489
BSNT_01538___ 484 ATTTTATT---TATC----GGTTCTACTTTATTAGG-GTTGATCTTCTTC 525
|||.|.|| .|.| ||.|| || ||| .|||.| ||.|||
BL03182___yhc 490 ATTCTGTTCGCAAGCGCAGGGATC-AC------AGGCCTTGCT-TTATTC 531
BSNT_01538___ 526 GGAACGGGTGGTGA-AACCGCCGCGAATATTCATTTAATCTATAAGGATG 574
|| ||..||.|| |.|.||| |..||||.||..|.|||...|.||
BL03182___yhc 532 GG---GGCAGGCGACAGCAGCC----AGGTTCACTTGGTGTATGTCGGTG 574
BSNT_01538___ 575 GCCATGTCA----TTGAGCAAAA---CATGATGGGGCATTTGGCC-ACAA 616
| | ||||..|||| |.||.|...|||||||||| .||.
BL03182___yhc 575 G-------AACGGTTGAAGAAAAAAGCCTGCTATTGCATTTGGCCGGCAG 617
BSNT_01538___ 617 CGTATCTTTCTGAATCCG-TCTCGGCTTTAATGGTGGCGACGATGGCGTT 665
| ||| ||.||||||.|| |.|||..|||.|||.|||||||.|||||.||
BL03182___yhc 618 C-TAT-TTGCTGAATTCGATTTCGCTTTTGATGATGGCGACAATGGCCTT 665
BSNT_01538___ 666 TATGCTGTCTGCGGTATTCAGAAACAGCTCTCTTGCGGTTGGTTTTTCCA 715
||||.|.||.|||||.||||||||||||||.||.||.||.|||.||||.|
BL03182___yhc 666 TATGATTTCAGCGGTTTTCAGAAACAGCTCGCTCGCCGTAGGTATTTCGA 715
BSNT_01538___ 716 TCTTCTTGTTGGTT---GCCGGTACGATTGCA--ACTGCATTTATTGCAG 760
|.|||.|.|||||| |.|||.|||.|..|| .|||| |.||..
BL03182___yhc 716 TTTTCCTTTTGGTTATGGGCGGAACGGTGACAGGCCTGC-----TCGCGA 760
BSNT_01538___ 761 CGAAATTTGACTGGGCAAAGTATATATTGTTTGCTAATGTCGACTTGACT 810
|||||||||..|||||.||.||.||..|||||||.||....|||.|.|||
BL03182___yhc 761 CGAAATTTGCTTGGGCGAAATACATCCTGTTTGCCAACACGGACCTCACT 810
BSNT_01538___ 811 CAGTATGTGGATGGCACACCG-----TTAATAAAAGGGATGACTATGACG 855
||.||..|.||.||..|.||| ||.| ||| ||||||
BL03182___yhc 811 CAATACTTTGACGGATCTCCGGTTGTTTCA----------GAC-ATGACG 849
BSNT_01538___ 856 TT----TTCTC--TCGTCATGCTGGCGATCTACTTTATC-ATCTTCCTGT 898
.| ||||| |.||.||||||||..||||.|||||| .|.|||.||
BL03182___yhc 850 CTGGGATTCTCGATTGTGATGCTGGCTGTCTATTTTATCGTTTTTCATG- 898
BSNT_01538___ 899 TGCTTGCTTTCGGAATCTTCATGAAGCGGGATATTGCAAACTAA 942
||||.||.||.|...|.||||..|||.|.||.||.||....|||
BL03182___yhc 899 TGCTCGCCTTTGTTGTATTCACAAAGAGAGACATCGCTTCATAA 942
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