Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01540 and BL03178
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_01540___yhcJ.1.5803.seq
# -bsequence dna-align/BL03178___yhcJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01540___yhcJ-BL03178___yhcJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01540___yhcJ-BL03178___yhcJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01540___yhcJ
# 2: BL03178___yhcJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 927
# Identity: 520/927 (56.1%)
# Similarity: 520/927 (56.1%)
# Gaps: 204/927 (22.0%)
# Score: 1189.0
#
#
#=======================================
BSNT_01540___ 1 ATGAAAAAGTGGCTTATATGCA-GTTTTGTCCTTGTTCTTCTCGTTTCAT 49
|||||||| ||.|||| ||.||| ||.|||||..|.|.|
BL03178___yhc 1 ATGAAAAA-------ATTTGCATGTGTTG----TGATCTTCCTGCTGC-- 37
BSNT_01540___ 50 TTACTGCA-TGTTCAC------CGTCTGCAGAAC----ATG---AATCGA 85
||.|.||| ||.||.| || |.|||| || ||| ||.|.|
BL03178___yhc 38 TTGCGGCAGTGATCGCGGGGTGCG-CGGCAG-ACTCTGATGCGAAAACCA 85
BSNT_01540___ 86 TAAAAATCGGGAT-TGCTGAGTCTGACGG----GGCAATATGGAACTATA 130
|.||||||||.|| .||.|| |||| |..|||.|||.|||
BL03178___yhc 86 TTAAAATCGGCATCAGCGGA-----ACGGATACGAGAATTTGGGACT--- 127
BSNT_01540___ 131 TTGCT----CAAAAGGCTGAAGAGGCAGG------GCTGGATAT--TCAG 168
||| | .||||.||.|||.|.|.||| |||.||.|| |||.
BL03178___yhc 128 TTG-TGAAGAAAAAAGCCGAAAAAGAAGGCTTAAAGCTTGAAATCGTCAA 176
BSNT_01540___ 169 CTGATCCCTTTTTCTGATTATGCGGAGTCTGATATC--GCACTTGCTAAC 216
.|..||| ||.||||...||.| |.|.| ||..|.||.|.|
BL03178___yhc 177 ATACTCC--------GACTATGTTCAGCC--AAACCAGGCTTTGGCGAGC 216
BSNT_01540___ 217 AAAGAAATTGATGCCAACGCCTTTCAAACCATTTCATATTTTCAGTCGTT 266
...||.|||||.||||||||.|||||.||.||.||.||.|||.| |.
BL03178___yhc 217 GGCGACATTGACGCCAACGCTTTTCAGACGATATCCTACTTTAA----TG 262
BSNT_01540___ 267 CACTCAAA----AATACAAACTTAATTTGGCACCGCTCGGAACGACTTAC 312
||.||||| ||..|||.|||.|.||..|.|||.||||.||.||...|
BL03178___yhc 263 CATTCAAAAAGGAACGCAACCTTGAATTATCGCCGGTCGGCACAACGATC 312
BSNT_01540___ 313 ATAACGCCCATGGGCATTTATTC--AAAACGATATGA-CCGAATCC--GA 357
||..|.||.|||||||||||||| |.|| |||||| .|| || |.
BL03178___yhc 313 ATCGCTCCGATGGGCATTTATTCCGAGAA--ATATGATTCG---CCTGGC 357
BSNT_01540___ 358 GATATACC-----GCGAGGAGCTGTCGTTTCTGTTCCGGATAAAGCG--- 399
|||||||| |||.||| ..||.|.||||| |||||
BL03178___yhc 358 GATATACCAAACGGCGCGGA-----AATTGCCGTTCC-----AAGCGAAG 397
BSNT_01540___ 400 -TTCG-ATTTTGGCAGGGC---GCTTACGGTGCTCCAGGAAGCGGGTTTG 444
..|| |..|.|||||.|| |||| .||||..||...||.||..||
BL03178___yhc 398 CGACGAACATGGGCAGAGCCTTGCTT---CTGCTGGAGTCCGCCGGCCTG 444
BSNT_01540___ 445 CT--AACGCTGAAA-AACGGATTTAACGGAACAGGTTCAGTTGATATGAT 491
|| || |.||| .||||||||.||||||..||..|..|||||...||
BL03178___yhc 445 CTTCAA---TTAAAGGACGGATTTGACGGAAATGGAACGCTTGATGCAAT 491
BSNT_01540___ 492 TAAAGATAATCCGAGACACCTGAAATTAAAAGCTGTCCGGCAACAGGATG 541
||||||.|||||.|.|.|.||.|||.|.|.|.|.|| |||..|||
BL03178___yhc 492 TAAAGAAAATCCTAAAAAACTCAAAATCACAACGGT--GGCCGCAG---- 535
BSNT_01540___ 542 CAGTAAGCG----------GTGCCGACGTGTTTGTC-ATGAAACCATCAG 580
||.||.|| .|||||| |||| .||.|.||.|||.
BL03178___yhc 536 -AGCAAACGCCGCGCGTGCTTGCCGA------TGTCGCTGCATCCGTCAT 578
BSNT_01540___ 581 AAGCAA--AAAAAGCGG-----GCCTG-----AACCCGAAAAAGCATACG 618
.|.||| ..|.||||| |||.| |.||.|..|||| ||.||
BL03178___yhc 579 CAACAACGGCATAGCGGTTGACGCCGGCTTCCATCCTGTCAAAG-ATTCG 627
BSNT_01540___ 619 CT--------------AAAGAGCGGCGGACCCATGTCTGGGGAAGAGATG 654
.| |||.||||.| ||| || |.||.
BL03178___yhc 628 ATCAAACTGGAAGATGAAACAGCGAC--ACC---GT---------ACATC 663
BSNT_01540___ 655 AATTTGATTGTTGTCAGAGCGGAGGATCAAGATCGGGAAGCGCTGCAAAC 704
||..|.||||..|.||||.|.||.||.|..|||||.||||...||.|||.
BL03178___yhc 664 AACATTATTGCGGCCAGAACAGAAGACCGGGATCGCGAAGATTTGAAAAA 713
BSNT_01540___ 705 CATTCTTGAGCTTTATCAAGCTGATGATACAGCGGCATTTATAGAAAAAG 754
.||..|.|||||.||||||||.||.||.||.||.|.|||.||..||||||
BL03178___yhc 714 GATCGTCGAGCTGTATCAAGCAGACGACACTGCTGAATTGATTAAAAAAG 763
BSNT_01540___ 755 AATACCAGGGAGATCTTGTCCCGGCTTTTCTGCCTTTGAAACGTCTTTCA 804
|||...|.||||..|...|.|||.||||..|.|||.|.||| .|
BL03178___yhc 764 AATTTGACGGAGCACAGCTGCCGACTTTCGTTCCTCTAAAA-------GA 806
BSNT_01540___ 805 GATTGGAAGAATGAATTCGAACATTGA 831
.||.|| .||||.|
BL03178___yhc 807 CATCGG-CGAATAA------------- 819
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