Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01583 and BL03175

See Amino acid alignment / Visit BSNT_01583 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:02
# Commandline: needle
#    -asequence dna-align/BSNT_01583.1.5803.seq
#    -bsequence dna-align/BL03175___yhcP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01583-BL03175___yhcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01583-BL03175___yhcP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01583
# 2: BL03175___yhcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1157
# Identity:     570/1157 (49.3%)
# Similarity:   570/1157 (49.3%)
# Gaps:         406/1157 (35.1%)
# Score: 1321.5
# 
#
#=======================================

BSNT_01583         1 -TTGCGGGATGGCATAGGAAAGC-------GT----------GCGGCATC     32
                      |..|||   ||.|.|.||||||       ||          ||||   .
BL03175___yhc      1 GTGACGG---GGGAGATGAAAGCAGCCTTTGTTTTAATCATGGCGG---G     44

BSNT_01583        33 CGCTCTATTCCTGTGCGGAGTCCTTGTGATGCTGGC-----------TGT     71
                     ||||||||.|    ||    ||  |||.||  ||||           |||
BL03175___yhc     45 CGCTCTATCC----GC----TC--TGTTAT--TGGCCATTTTTGTCGTGT     82

BSNT_01583        72 AAGCTCAGCCATCGTATCA-AGCGCGATGTATATCCTGTCTTTTCCAGGT    120
                         |||||||       | ||.||         ||||            
BL03175___yhc     83 ----TCAGCCA-------AGAGAGC---------CCTG------------    100

BSNT_01583       121 CAGGCATCTGGAAT------AACAAAAGAACAAGTGA------CGAAGCA    158
                      ||||..|||...|      ||.|||||||.||.|||      ||..|.|
BL03175___yhc    101 -AGGCGGCTGTGCTTTCGGGAAAAAAAGAAAAACTGAAAGAATCGCTGGA    149

BSNT_01583       159 CATG-------AAGAAAGAGTCATTCAAACAGGCCGATATTTATTACACT    201
                     .|||       |.|||||.||||         ||    |||||||||.||
BL03175___yhc    150 AATGGTCAAATATGAAAGTGTCA---------GC----ATTTATTACGCT    186

BSNT_01583       202 TCTAAGGAAA-----AGTCC--TTACTGCCATTGACGAAAGAAACGCTTG    244
                           ||||     ||.||  || |||....||||.||.||.||||||.
BL03175___yhc    187 ------GAAAAAGATAGGCCGATT-CTGGAGCTGACAAAGGAGACGCTTC    229

BSNT_01583       245 AATATGCAGTCAG-TATTAATCAGATTATGATTGGATATTCGAATCAAAA    293
                     ...||||.| |.| |||.||||.|....||.|||          ||   |
BL03175___yhc    230 GGGATGCCG-CTGATATGAATCGGGAACTGTTTG----------TC---A    265

BSNT_01583       294 G-CCTATT---GACA---------TTAT-TTTTTTTCCTAATGAAAAAC-    328
                     | |||.||   ||||         |.|| ||||||||        |||| 
BL03175___yhc    266 GTCCTCTTCAAGACAGCGTTGATTTGATCTTTTTTTC--------AAACC    307

BSNT_01583       329 ------AGATGGAGGCTTACTCCGGTTT----ATT---GGATGTAGTTGG    365
                           |.||||||.|.|       |||    |||   ||||.||...||
BL03175___yhc    308 GCGATGATATGGAGTCAT-------TTTCAAAATTAAAGGATATAACCGG    350

BSNT_01583       366 TTTTTATTCTGAACG---GGAGCAGCTGATCGGATTGTTGCCTGAAGAGA    412
                     .|||||||| .||||   .|||  |.|||||||..|.|||||.||.||||
BL03175___yhc    351 ATTTTATTC-AAACGATATGAG--GATGATCGGGCTTTTGCCCGAGGAGA    397

BSNT_01583       413 AAAAGAAACTGTTAGAAGGGGACGAGG---TAGCGGTTTATTTGTACCAG    459
                     ..|||.|.||| .|.||.||  |||||   |.||.||.|...|||||.|.
BL03175___yhc    398 GGAAGCATCTG-AATAACGG--CGAGGGATTCGCCGTCTTCCTGTACAAA    444

BSNT_01583       460 AGATTGTTGATTCATGAATACTCGCACCATGCGTTTCACCAGAAATTGAA    509
                     .|..||.||.|.|||||.||..|.||..||||.||||||...||..|||.
BL03175___yhc    445 CGGGTGCTGGTGCATGAGTATACCCATTATGCTTTTCACGTCAAGCTGAG    494

BSNT_01583       510 GGAGCTTGAGACGGATCCCGATGAGTT-TCCGTTATGGTTTCATGAAGG-    557
                     .||.||..|..|.|| ||||...|.|| ||||.|.||||||||.||||| 
BL03175___yhc    495 AGAACTGAATGCCGA-CCCGGGAACTTATCCGCTCTGGTTTCACGAAGGA    543

BSNT_01583       558 GTTAAGCGAGTGGATTGCGAACTATGAAT-------TGCTCAT-------    593
                     ||  |||                 |||||       |||||||       
BL03175___yhc    544 GT--AGC-----------------TGAATGGGCTTCTGCTCATGCCGCGA    574

BSNT_01583       594 ---AGATCCGATCACGTT---TTCTGTCGTGCCCTT--------TGACCG    629
                        |.|||||  .||.||   |||.|||||.|||||        |||   
BL03175___yhc    575 TAGAAATCCG--GACTTTGCCTTCAGTCGTCCCCTTGAGCAAGCTGA---    619

BSNT_01583       630 TTTGCAGACTGATCGAGACTGGCAGGAAGCTAGAGCCGAATATGACACTG    679
                          ||||.||.||..|.|||||..||||..|..|.|.||||||.||.|
BL03175___yhc    620 -----AGACCGACCGGCAATGGCAAAAAGCCCGGACTGGATATGAAACCG    664

BSNT_01583       680 ATGTCTATTTGCAAAGCTTTTATATGATCGATGAGCTGACGGACAAATAC    729
                     ||.|.|||||||||||.|.||||.|||||||.|||||..||||.|||.|.
BL03175___yhc    665 ATATTTATTTGCAAAGTTATTATTTGATCGAAGAGCTTGCGGAGAAAAAA    714

BSNT_01583       730 GGGAAAGATATTAT-TTCAGAAATGATTAAGGAAACGGCAAAAAAAGGGG    778
                     ||.|..|...|.|| .|| ||.||.||..||||||||||  ..|..||||
BL03175___yhc    715 GGAAGGGGCGTCATCCTC-GACATTATCGAGGAAACGGC--TGAGCGGGG    761

BSNT_01583       779 A--CTTTGAAAAAGGGTTTAA-------ATCAGCAACAAAGGAATGTC-T    818
                     |  .||||.|.|.||.|||||       .||.||.|         ||| |
BL03175___yhc    762 AAGTTTTGCAGACGGATTTAAGGCCGCCGTCGGCCA---------GTCGT    802

BSNT_01583       819 TGATCA--ATTTGAAAAAGATTTTAAGAAAAAATTTGAA---AAAAACAG    863
                     ||| ||  .|||||.|||||.|||||...|||||..|||   |||||.| 
BL03175___yhc    803 TGA-CAGGTTTTGAGAAAGAATTTAAACGAAAATACGAAGCGAAAAAAA-    850

BSNT_01583       864 TGCGGCATTGGATAGTATCTATC--CAATGCCTTTGTT----ATTAGTGA    907
                       ||||.|||  .|||.|| |||  |||||||.|| ||    ||.|.|||
BL03175___yhc    851 --CGGCGTTG--AAGTTTC-ATCTTCAATGCCGTT-TTCATGATCAATGA    894

BSNT_01583       908 AGTCCTTGCTGACCCATTCCGCCATTCCGACTTGTGTCGGAGGCATTTGT    957
                                                                       
BL03175___yhc    894 --------------------------------------------------    894

BSNT_01583       958 CCTTGGGCAGGGGCGAATGAATTTCGCAGCTGTTCCATATCCTGCGCATC   1007
                                                                       
BL03175___yhc    894 --------------------------------------------------    894

BSNT_01583      1008 AAGCTGA   1014
                            
BL03175___yhc    894 -------    894


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