Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01589 and BL03171
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_01589___yhcU.1.5803.seq
# -bsequence dna-align/BL03171___yhcU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01589___yhcU-BL03171___yhcU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01589___yhcU-BL03171___yhcU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01589___yhcU
# 2: BL03171___yhcU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 432
# Identity: 239/432 (55.3%)
# Similarity: 239/432 (55.3%)
# Gaps: 108/432 (25.0%)
# Score: 612.0
#
#
#=======================================
BSNT_01589___ 1 ATGGCAAGAAAGGTGATTGACGTGAGAATTGTGAACGCAGCAACTGCAGA 50
.||.|||||||.||.||||||||||.|||
BL03171___yhc 1 ---------------------TTGCGAATTGTAAAGGCAGCAACTGAAGA 29
BSNT_01589___ 51 ACAGGAGAGCTTTATCAAGGAGCTGTCTAT-GGAGCTG-ATCCATGATGT 98
|||.||.|..|.||||.|.||||| |.||| .|||||| ||| |..|
BL03171___yhc 30 ACAAGAAATTTATATCGAAGAGCT-TGTATCAGAGCTGTATC----AAAT 74
BSNT_01589___ 99 ATTTCCTCTTTATTTCTCCGAACTGGAC-------------ATTCAGCGC 135
||||||..|.||.|| ||| |..|| |.||
BL03171___yhc 75 ATTTCCATTGTACTT----GAA-TAAACAAAAAATAAAAGAACTC----- 114
BSNT_01589___ 136 TTTAAAAAGAAAGGCGTTCTGTC--TTTAAATAACCATTATTACCAAGGA 183
||||||.|.||||..|| || ||.||| .|..||.|.|||.|||||
BL03171___yhc 115 ---AAAAAGCAGGGCGCGCT-TCAATTGAAA-GAGGATGAATACAAAGGA 159
BSNT_01589___ 184 ACATTAAAAGAAGCATTTCAAATTATGGCTTGTCTGCAAATGATACAT-- 231
||..|..|.|||||.|||||.||||||.|..|.||||||.||||.|||
BL03171___yhc 160 ACGCTCGATGAAGCGTTTCAGATTATGACAAGCCTGCAATTGATCCATGC 209
BSNT_01589___ 232 ATTATCCTGACCAAGCCTTCGC----CGCA--------CTCTGATTTGA- 268
||||| |.||.||| || |||| |||..| ||
BL03171___yhc 210 ATTAT--TAACTAAG-----GCGAAGCGCAAGTGGGTGCTCAAA---GAC 249
BSNT_01589___ 269 -GTGATCAGGCGATTTTTGAAAAAAACAGCAAGATGCTGAATGATTTTGG 317
|||||| |.||.||.|||||.|||...|.|||||||||.|..||
BL03171___yhc 250 CGTGATC------TGTTCGATAAAAATAGCCGCAAGCTGAATGACTGCGG 293
BSNT_01589___ 318 GATTTATTTTCCGTTTGCTTTTTCTGACTTTCAAA---AGAAGACTAACA 364
..|.||.||.||..|..|.|.|.|.||||||||.| .|||.||
BL03171___yhc 294 TCTGTACTTCCCTCTAACATCTGCCGACTTTCATATCGTGAATAC----- 338
BSNT_01589___ 365 AAGCCTTTTTCGGTCAAAGAAGGCTGATATAA 396
||...|.|.||.||||||.|||
BL03171___yhc 339 ----------CGAGAATAAAATGCTGATGTAA 360
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