Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01581 and BL03161
See
Amino acid alignment /
Visit
BSNT_01581 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:02
# Commandline: needle
# -asequence dna-align/BSNT_01581___yhcM.1.5803.seq
# -bsequence dna-align/BL03161.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01581___yhcM-BL03161.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01581___yhcM-BL03161.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01581___yhcM
# 2: BL03161
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 496
# Identity: 214/496 (43.1%)
# Similarity: 214/496 (43.1%)
# Gaps: 203/496 (40.9%)
# Score: 432.0
#
#
#=======================================
BSNT_01581___ 1 ATGTTGTTCAACCAGCGAAGA------GGAATCAGCCCCACAGCATTGAT 44
|||||.| ||||| ||.|||...|||.|.|.|||..|
BL03161 1 ---TTGTTTA------GAAGAAGATCTGGCATCCATCCCGCTGTATTAGT 41
BSNT_01581___ 45 CATAGGATCAACTATGCTTATT----GCTGCATTATCACCTCAGATCCGC 90
..||||||||.| ||| ||| ||.||.||.||.||..|.||||||
BL03161 42 TTTAGGATCAGC--TGC--ATTAACCGCGGCTTTTTCTCCCGAAATCCGC 87
BSNT_01581___ 91 CACAGAATCAGCGG---GTT---------TATCACAGGAC-----AAATG 123
.|.|||.|.|.||| ||| .||.|.||||| .||.|
BL03161 88 AAAAGATTGACCGGCATGTTCGCGAATGGCATGAGAGGACGGCAGCAAGG 137
BSNT_01581___ 124 AA-CAGACGAAATTCAGAAAATAACACGTTTGATGCTTCTAATGTAGGAA 172
|| |.|.||.|| |||||..| ||||| |||...|...
BL03161 138 AAGCGGCCGCAA-TCAGACGA---------TGATG-----AATCCGGCTG 172
BSNT_01581___ 173 ACATAGTCAAACAAGCATTTAGCGGCGGCAGCGGTGATAACCAGGACCGT 222
||||..||||.||.||.|||| |.||.|||
BL03161 173 ACATGATCAAGCAGGCTTTTA-----------------ATCCGGGA---- 201
BSNT_01581___ 223 TCGCAGAATCAAAGCCAGCGGCAAAATGGCCGTCAGCACCAGCACGCAGG 272
|.|.||||| |.|.|.||||..||..||||
BL03161 202 --GGACAATCA-------------------CATGAACACCGCCAGTCAGG 230
BSNT_01581___ 273 ACA-GCAGCAACCACAGCATCAGCATACACAGTCTCAAACTAGGCAAACT 321
.|| .|.|||| |..|.||||| ||||.|.||.|| |
BL03161 231 CCATACGGCAA----ATGACCAGCA---------TCAATCAAGCCA---T 264
BSNT_01581___ 322 GAGACTGCCGCGAAAAAAAGACAGCCGCATTATGCTGAACCCATTCATTT 371
..||||||..||
BL03161 265 ATGACTGCTCCG-------------------------------------- 276
BSNT_01581___ 372 TGAACAAAGCGCAATGAATGTCATGGACGA--------CA----ACACGA 409
.|||||||||||.|||| || |.||||
BL03161 277 -------------GTGAATGTCATGAACGATCAGGCTGCAGCTCAGACGA 313
BSNT_01581___ 410 TGATGGA--------AATGCTGGAGGACTTAGAACCCGGCCGTTAA 447
||.|.|| ||.||| |.|.|.||
BL03161 314 TGTTCGATGACGATCAAAGCT-----ATTCATAA------------ 342
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.