Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01587 and BL03158
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_01587___yhcT.1.5803.seq
# -bsequence dna-align/BL03158___yhcT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01587___yhcT-BL03158___yhcT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01587___yhcT-BL03158___yhcT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01587___yhcT
# 2: BL03158___yhcT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1001
# Identity: 625/1001 (62.4%)
# Similarity: 625/1001 (62.4%)
# Gaps: 175/1001 (17.5%)
# Score: 1654.5
#
#
#=======================================
BSNT_01587___ 1 ATGAACCAAAAAGGCA--GAGGGCTTGAGATCCTCATCAATGAAAAACA- 47
|||||||||||| | .|.||||| || ||.|||.|| .|.|||
BL03158___yhc 1 ATGAACCAAAAA---AATCACGGCTT---AT--TCTTCAGTG-CAGACAT 41
BSNT_01587___ 48 --GG----ACGGCCAATGGCTGTTT---TCCGTACTCAAAACA-----GC 83
|| |||||.|| || ||| |.|.||.|.|||| | ||
BL03158___yhc 42 ACGGCATCACGGCGAA---CT-TTTATATGCATATTTAAAA-AGAGAGGC 86
BSNT_01587___ 84 GCTCAAAGCTTCTAAACCAGTGATACAAGACTGGATGTCCCATCAACAGA 133
| |||||.||.||.||.||.||.|||.|||||| ||.|| ||| ||
BL03158___yhc 87 G---AAAGCATCGAAGCCTGTCATTCAATACTGGA--TCGCA--AAC-GA 128
BSNT_01587___ 134 TAAAG-----GTCAATCACGAATCCGTCTTAAACAATATGATTG--TAAA 176
.|||| ||.|||||..||||.| |.||.||..|.|.|.| |..|
BL03158___yhc 129 GAAAGTTAAAGTGAATCATAAATCGG--TGAATCATAACGTTCGGCTGGA 176
BSNT_01587___ 177 AAAGGGAGACCGCGTGTTCATTGATCTTCAG----------GAAAGTGAA 216
.|..||||||.|||||.|.||.|||| |||| |||||.|
BL03158___yhc 177 GAGCGGAGACAGCGTGATGATCGATC-TCAGAGAGGAGGAAGAAAGCG-- 223
BSNT_01587___ 217 GCATCTTCGGTCATTCCGGAGTATGGCGAGCTTGATATTTTATTTGAGGA 266
|.|||.|| ||.||.||.||.||.|||....|..|.|||||.||
BL03158___yhc 224 GAATCGTC-------CCTGAATACGGGGAACTTCCCGTCCTGTTTGAAGA 266
BSNT_01587___ 267 CAATCATATGCTCATCATCAATAAACCCGCTGGCATCGCGACGCATCCGA 316
..||||.|||||.||..|||||||.||.||.||.||.|||||.|||||||
BL03158___yhc 267 TGATCACATGCTTATTGTCAATAAGCCGGCGGGAATGGCGACTCATCCGA 316
BSNT_01587___ 317 ATGAGGATGGGCAAACCGGCACACTG-GCTAATTTGATCGCGTATCATTA 365
||||.|..||.||.||||||||.||| ||.|..||| |.||||.|.|||.
BL03158___yhc 317 ATGAAGCCGGCCAGACCGGCACGCTGAGCAACCTTG-TGGCGTTTTATTT 365
BSNT_01587___ 366 TCAGATAAATGGCGA--AACATGTAAGGTGCGCCACGTCCATCGTCTTGA 413
|||.||.||.||.|| |.| |.||.||.||.||||||||.|||||.||
BL03158___yhc 366 TCAAATGAACGGGGAGGAGC--GAAAAGTCCGGCACGTCCACCGTCTGGA 413
BSNT_01587___ 414 TCAGGATAC-ATCTGGCGCTATCGTTTTTGCCAAGCATCGTTTGGCACAC 462
..||||||| |.| ||||||.||||||||||.|||||.||..|.||.|||
BL03158___yhc 414 CAAGGATACGAGC-GGCGCTGTCGTTTTTGCAAAGCACCGCCTCGCCCAC 462
BSNT_01587___ 463 GCCATCTTAGACCAGCAGTT--AGAGAAAAAGACGCTGAAGCGTACGTAT 510
||..|.||||||.|.|||.| |.||||||..| |||..|||.||.|||
BL03158___yhc 463 GCGCTTTTAGACGAACAGCTGCAAAGAAAAGAA--CTGGCGCGGACATAT 510
BSNT_01587___ 511 ACCGCCATCGCTGAAGGTAAGCTACGGACGAAAAAAGGG-ACAATTAATT 559
...|||.|.||.|||||.|| .|.|.||..|||||.||| ||.|||....
BL03158___yhc 511 GTAGCCGTAGCGGAAGGGAA-ATTCAGAAAAAAAACGGGAACCATTTCGG 559
BSNT_01587___ 560 CACCGATCGGCAGAGAC---CGCTCACACCCGACAAGACGCCGGGTTTCA 606
|.||.|||||||||||| |.| ||| ||||.| |||.|..||||.||
BL03158___yhc 560 CGCCAATCGGCAGAGACAAGCAC-CAC-CCCGTC-AGAAGAAGGGTGTC- 605
BSNT_01587___ 607 CCAGGCGGGCAAACAGCC----GTCACTCATTTCAAGGTAATGGCCAGCA 652
|||..|.|| |||||| |||||.||||| || |
BL03158___yhc 606 CCATTCCGG---ACAGCCCGCTGTCACCCATTT--------TG------A 638
BSNT_01587___ 653 ATGCGAAAG-----AACGGCTGT--CGCTCGTT----------GAATTAG 685
|| |||||| .||.||.|| ||.| ||| ||.|| .
BL03158___yhc 639 AT-CGAAAGGATATGACAGCCGTCACGAT-GTTACACTGTGCAGACTT-C 685
BSNT_01587___ 686 AGCTGGAAACAGGCAGAACACACCAAATCCGTGTTCATCTGGCGAGCCTC 735
|||||||.||||||.||||.||||||||.||.|||||.||.||.|||.||
BL03158___yhc 686 AGCTGGAGACAGGCCGAACCCACCAAATACGCGTTCACCTTGCAAGCATC 735
BSNT_01587___ 736 GGCCATCCGTTGACAGGAGACTCGCTT-TACGGAGG-----CGGGAGCAA 779
||.|||||.|||.||||.|||.| ||| |||||.|| .|||
BL03158___yhc 736 GGTCATCCTTTGTCAGGCGACAC-CTTATACGGCGGTTCAAAGGG----- 779
BSNT_01587___ 780 GCTGCTAAACAGGCAGGCACTGCACGCCAATAAAGTACAAGCGGT-TCAC 828
|||..|..|.||.|||||.||.|||| ||||..||..||| | ||||
BL03158___yhc 780 GCTTTTTCAGAGACAGGCTCTTCACG-CAATCGAGATCAA----TGTCAC 824
BSNT_01587___ 829 ----CCGATAACAGACGAGC---TCATAGTTGCTGAAGCCCCTTTCCCTG 871
|||||.|||.|.||.| |||..||.||.|.| ||.||| ||.|
BL03158___yhc 825 CCATCCGATCACAAAAGAACGTGTCACTGTCGCGGCA-CCGCTT--CCGG 871
BSNT_01587___ 872 CTGATATGAAAAAC------------CTTTGCCGCACATATTTTTCATGA 909
.||||.|.|||.|| ||.|.|.|||| ..||.||.|
BL03158___yhc 872 ATGATTTAAAAGACGAAATCGGACGACTGTTCGGCAC----GGTTGATTA 917
BSNT_01587___ 909 - 909
BL03158___yhc 918 A 918
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