Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03111 and BL03140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_03111___yobW.1.5803.seq
# -bsequence dna-align/BL03140___csk22.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03111___yobW-BL03140___csk22.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03111___yobW-BL03140___csk22.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03111___yobW
# 2: BL03140___csk22
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 608
# Identity: 324/608 (53.3%)
# Similarity: 324/608 (53.3%)
# Gaps: 172/608 (28.3%)
# Score: 741.0
#
#
#=======================================
BSNT_03111___ 1 ATGCATCTTACACTTCAGAGCGTTTATCCTGCCATGATCAT------CAT 44
||.|| ||||.|| ||||| |||
BL03140___csk 1 -------TTGCA---------GTTTTTC--------ATCATTGTGTCCAT 26
BSNT_03111___ 45 CTTTTTTCTGTATAAAAAAATT-AAAAGGTCCATCGGATACCAGCCGCTG 93
| .|||.||| .||.|| |||.||||..||||.||.|||||..|.
BL03140___csk 27 C----GTCTATAT---CAAGTTCAAACGGTCGGTCGGTTATCAGCCTTTA 69
BSNT_03111___ 94 AAGC---CCCGCTGGCTGTTCACCCGTATCATTCTTTTCTCG---CTGTT 137
|||| |.|||..|.|||| |||.|||||.|||||.||| .|.||
BL03140___csk 70 AAGCCGGCACGCATGTTGTT---CCGGATCATCCTTTTTTCGGGAATTTT 116
BSNT_03111___ 138 TGCTTTTGGCCTTTCAATCTTCAGCGCCATTCACCCTTT-------TTTA 180
.|.||||...||..|.| |.|||||..|||||||||| |||
BL03140___csk 117 CGTTTTTCTGCTGACGA---TGAGCGCACTTCACCCTTTATCATACTTT- 162
BSNT_03111___ 181 TATGGATATCTCATTTTGGGCAT---TCTTGGCGGATGGCTC--CTT--- 222
|||| ||||.||| ||.|| .|| |||| ||| |||
BL03140___csk 163 TATG---ATCTGATT---GGGATCGCGCT---CGGA---CTCATCTTGAC 200
BSNT_03111___ 223 -GTCTTTTTCGCTAAGAAAAACATCTCCTTTGAAAAACGCAGAGGAAAGA 271
||| |.|.|||| |||..|..|.||..|.|||||.||..|.|||....
BL03140___csk 201 CGTC-TATGCGCT--GAAGCATGTGTCGATCGAAAATCGGGGCGGAGTCC 247
BSNT_03111___ 272 TCTATTTTCGGACTCATATTTGGGTAGAGGTGA---TTCTCTTAACTTTA 318
|.|||||..|.||.|||.|.|||||.||..||| |.||||| ||||
BL03140___csk 248 TTTATTTCAGAACGCATTTATGGGTTGAATTGATCGTACTCTT---TTTA 294
BSNT_03111___ 319 TTTCTATCAAGATTTCTGTATCGAGTGACGGAGCTTTATCTTACCTCACC 368
|||.|||...|.||||||||.||..|..|.||| ||| ...||.|
BL03140___csk 295 TTTTTATACCGGTTTCTGTACCGGATCGCCGAG----ATC---GGCCAGC 337
BSNT_03111___ 369 TGATCTAAACAGCCTTGGATCATACAGTCAGTCAATCGG-----AACGG- 412
|| |||.||..|.| |.|||.|.|....|||| .||||
BL03140___csk 338 TG-------CAGACTGCGGT--TTCAGACGGGGGTTCGGCAGCTTACGGC 378
BSNT_03111___ 413 ACCCTCT--------GACAATTGGCG-------TCTGTTTTCTGATA--- 444
.||||.| ||| ..|||| ||.|||||.|..||
BL03140___csk 379 GCCCTTTTTGCGCAGGAC--CCGGCGACGATGATCGGTTTTTTTGTACTG 426
BSNT_03111___ 445 GCCGTTTATTATATCGGTTTTTCTTCTTTTGTCATCAAGCTCA----GCA 490
||||||||||||.|||||||.||||.||||||..|.|| | |||
BL03140___csk 427 GCCGTTTATTATGTCGGTTTCTCTTTTTTTGTTTTAAA----AAAAGGCA 472
BSNT_03111___ 491 GAAACGAACTCGAACAGCACGAATACA--ATAAAGAAAAAGACATCCTTG 538
|||.|||| |||.|||.| .|| .|||
BL03140___csk 473 GAACCGAA---GAAAAGCGC----TCAGCTTAA----------------- 498
BSNT_03111___ 539 CCCGCTAA 546
BL03140___csk 498 -------- 498
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