Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03111 and BL03140

See Amino acid alignment / Visit BSNT_03111 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_03111___yobW.1.5803.seq
#    -bsequence dna-align/BL03140___csk22.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03111___yobW-BL03140___csk22.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03111___yobW-BL03140___csk22.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03111___yobW
# 2: BL03140___csk22
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 608
# Identity:     324/608 (53.3%)
# Similarity:   324/608 (53.3%)
# Gaps:         172/608 (28.3%)
# Score: 741.0
# 
#
#=======================================

BSNT_03111___      1 ATGCATCTTACACTTCAGAGCGTTTATCCTGCCATGATCAT------CAT     44
                            ||.||         ||||.||        |||||      |||
BL03140___csk      1 -------TTGCA---------GTTTTTC--------ATCATTGTGTCCAT     26

BSNT_03111___     45 CTTTTTTCTGTATAAAAAAATT-AAAAGGTCCATCGGATACCAGCCGCTG     93
                     |    .|||.|||   .||.|| |||.||||..||||.||.|||||..|.
BL03140___csk     27 C----GTCTATAT---CAAGTTCAAACGGTCGGTCGGTTATCAGCCTTTA     69

BSNT_03111___     94 AAGC---CCCGCTGGCTGTTCACCCGTATCATTCTTTTCTCG---CTGTT    137
                     ||||   |.|||..|.||||   |||.|||||.|||||.|||   .|.||
BL03140___csk     70 AAGCCGGCACGCATGTTGTT---CCGGATCATCCTTTTTTCGGGAATTTT    116

BSNT_03111___    138 TGCTTTTGGCCTTTCAATCTTCAGCGCCATTCACCCTTT-------TTTA    180
                     .|.||||...||..|.|   |.|||||..||||||||||       ||| 
BL03140___csk    117 CGTTTTTCTGCTGACGA---TGAGCGCACTTCACCCTTTATCATACTTT-    162

BSNT_03111___    181 TATGGATATCTCATTTTGGGCAT---TCTTGGCGGATGGCTC--CTT---    222
                     ||||   ||||.|||   ||.||   .||   ||||   |||  |||   
BL03140___csk    163 TATG---ATCTGATT---GGGATCGCGCT---CGGA---CTCATCTTGAC    200

BSNT_03111___    223 -GTCTTTTTCGCTAAGAAAAACATCTCCTTTGAAAAACGCAGAGGAAAGA    271
                      ||| |.|.||||  |||..|..|.||..|.|||||.||..|.|||....
BL03140___csk    201 CGTC-TATGCGCT--GAAGCATGTGTCGATCGAAAATCGGGGCGGAGTCC    247

BSNT_03111___    272 TCTATTTTCGGACTCATATTTGGGTAGAGGTGA---TTCTCTTAACTTTA    318
                     |.|||||..|.||.|||.|.|||||.||..|||   |.|||||   ||||
BL03140___csk    248 TTTATTTCAGAACGCATTTATGGGTTGAATTGATCGTACTCTT---TTTA    294

BSNT_03111___    319 TTTCTATCAAGATTTCTGTATCGAGTGACGGAGCTTTATCTTACCTCACC    368
                     |||.|||...|.||||||||.||..|..|.|||    |||   ...||.|
BL03140___csk    295 TTTTTATACCGGTTTCTGTACCGGATCGCCGAG----ATC---GGCCAGC    337

BSNT_03111___    369 TGATCTAAACAGCCTTGGATCATACAGTCAGTCAATCGG-----AACGG-    412
                     ||       |||.||..|.|  |.|||.|.|....||||     .|||| 
BL03140___csk    338 TG-------CAGACTGCGGT--TTCAGACGGGGGTTCGGCAGCTTACGGC    378

BSNT_03111___    413 ACCCTCT--------GACAATTGGCG-------TCTGTTTTCTGATA---    444
                     .||||.|        |||  ..||||       ||.|||||.|..||   
BL03140___csk    379 GCCCTTTTTGCGCAGGAC--CCGGCGACGATGATCGGTTTTTTTGTACTG    426

BSNT_03111___    445 GCCGTTTATTATATCGGTTTTTCTTCTTTTGTCATCAAGCTCA----GCA    490
                     ||||||||||||.|||||||.||||.||||||..|.||    |    |||
BL03140___csk    427 GCCGTTTATTATGTCGGTTTCTCTTTTTTTGTTTTAAA----AAAAGGCA    472

BSNT_03111___    491 GAAACGAACTCGAACAGCACGAATACA--ATAAAGAAAAAGACATCCTTG    538
                     |||.||||   |||.|||.|    .||  .|||                 
BL03140___csk    473 GAACCGAA---GAAAAGCGC----TCAGCTTAA-----------------    498

BSNT_03111___    539 CCCGCTAA    546
                             
BL03140___csk    498 --------    498


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