Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02943 and BL03135
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02943___yndG.1.5803.seq
# -bsequence dna-align/BL03135.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02943___yndG-BL03135.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02943___yndG-BL03135.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02943___yndG
# 2: BL03135
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1005
# Identity: 531/1005 (52.8%)
# Similarity: 531/1005 (52.8%)
# Gaps: 303/1005 (30.1%)
# Score: 1251.0
#
#
#=======================================
BSNT_02943___ 1 GTGAGGCAGAAA---CCGATTTATGTAGAAAT------------CGAAAT 35
|.|.|.||| ||.|||||||||||||| .|||||
BL03135 1 ---ATGAAAAAAACTCCAATTTATGTAGAAATATCCATCCAGGCAGAAAT 47
BSNT_02943___ 36 GAAATCTGATCTGGATACACTCTGGGAATATACACAAAACCCATCACTGC 85
| ||.|.| ||.|||...|||||.|||.|||||.|.||.|
BL03135 48 G------GAGCGG------CTATGGCGCTATACCCAAGACCCAACCCTCC 85
BSNT_02943___ 86 ATAAGGAATGGGATCTCCGGTTTTCAAATATTACGTATTTGAATAGTCAG 135
||..|.|||||||..|.||.|||.|..|.|||||.|||||.||..| |||
BL03135 86 ATCGGCAATGGGACTTGCGATTTACGGACATTACCTATTTAAAGCG-CAG 134
BSNT_02943___ 136 -CCATGCGAAAAACAGAAGTTTCTT-TACGAAACAAGGGTAGGCTTTGGA 183
||..|.|||...||| ||.||||| ||||||||.||..|.|||||.||.
BL03135 135 ACCGGGTGAACCTCAG-AGGTTCTTATACGAAACGAGAATCGGCTTCGGC 183
BSNT_02943___ 184 TTAAAGGTGTCAGGTACAGGAGA---------AACCGTCCGTGTTTTCAA 224
|||||..|.||.||.||.||.|| ||.||| .||||||
BL03135 184 TTAAAAATCTCCGGCACCGGGGAGTCTGCCGGAAACGT-----ATTTCAA 228
BSNT_02943___ 225 CAAATGTTCATCT---GAAAG-GTCTTCTTCACT---GGCTTTTGGCT-C 266
.|.| || ||.|| ||| ||.||||| | ||.||| |
BL03135 229 GATA-------CTGGAGACAGAGTC-TCGTCACTCAAG----TTCGCTAC 266
BSNT_02943___ 267 TGATCATCCATTATCTCTGATTCGGCATGGAAGCGGCTACTGGAAGTATA 316
..|.||.||..|.|||.|.|||||..|.|||||.||.||.||||| |
BL03135 267 AAACCACCCGCTTTCTGTCATTCGCGAAGGAAGAGGATATTGGAA----A 312
BSNT_02943___ 317 TACAGAGAGA---AAATGGGAAAATGACGTTTTTAACACAGTACCAATAC 363
|||||.|||| |||..|| |||.||||||.|.|||||.|||.|.|
BL03135 313 TACAGCGAGAGCGAAACCGG--AATCACGTTTATGACACAATACGATT-- 358
BSNT_02943___ 364 AAAACAGCC--TACGGACTGCTGGGAAGATGGATTGATCGTTTAT--TAT 409
|..|||.|| |||||...||||| |..||.||| |...||| .||
BL03135 359 ATGACACCCGTTACGGTAGGCTGG---GCCGGCTTG--CAGATATGGCAT 403
BSNT_02943___ 410 TTCGGCCGCTGCTTGGCTGGGCGACTGCCTGGAGCTTTGATGCATTAAGG 459
|..|||||||.||.|||||||||||.||||||||.|||||||||.|.|.|
BL03135 404 TCAGGCCGCTCCTCGGCTGGGCGACGGCCTGGAGTTTTGATGCACTGAAG 453
BSNT_02943___ 460 CTTTGGGTAGAGCAAAATAAA-------CATCCGAAGC-GCTT------- 494
.|||||.|.|| ||| |||||.|.|| ||||
BL03135 454 ATTTGGCTTGA-------AAAAGGGCTCCATCCAAGGCTGCTTTTTCAAA 496
BSNT_02943___ 495 ---CATTCGATCTGCTATCATCTATGTGTTCATGTGTCTGTTTTTCAGCC 541
||||.| |||||..|.||.|.|||||| |
BL03135 497 AAACATTGG-----------TCTATTGGCTCGTTTGTCTG---------C 526
BSNT_02943___ 542 TGTTT---------TGGTTCTATCAAGGCTTTG-------------CAGG 569
||||| |||.|.||.|||||..||| ||.|
BL03135 527 TGTTTTCTTTCGTCTGGATTTACCAAGGGCTTGTTCCAAAGCTCATCATG 576
BSNT_02943___ 570 --------TGTTGAAACAAGCA----------TTTT------GGCAG--- 592
||..||||..|||| |||| |||.|
BL03135 577 GCTCACCCTGGGGAAATCAGCATGCTTTCGGCTTTTACGGGCGGCCGTTT 626
BSNT_02943___ 593 -------GAA---CAGCGGAG----ATAGGCTTAGC-------------- 614
||| |..|.||| ||.||.|||||
BL03135 627 CCATCCCGAAACGCTCCTGAGGCTTATCGGTTTAGCCGAGGTGATGGTCG 676
BSNT_02943___ 615 -TATTTTGTGGCTGCTTCCTTT---AAAAAGAAAATGGATCATT---CAT 657
..|.||.|||||...||||.| .|||||.||.|||.|..|| |||
BL03135 677 GCGTGTTATGGCTTTATCCTGTTCGGAAAAGGAAGTGGTTTCTTCTGCAT 726
BSNT_02943___ 658 GGTGTCCAGGCTTGTATTTTTGCTGGGTTTGCTTGTCTAGGTTCC----G 703
...|||| .||||| ||| ||||| ||| |..||| |
BL03135 727 ATCGTCC-TGCTTG------TGC------TGCTT-TCT-GCCTCCGCGGG 761
BSNT_02943___ 704 AA------ATAT----TCATGTG--GATTCTGTTGA-------GTG---- 730
|| |||| ||.|.|| ||..||.||.| |||
BL03135 762 AATGGCTGATATCGCATCTTTTGCCGAACCTTTTAACCCGGTCGTGCTCA 811
BSNT_02943___ 731 ---------------TGTTTTCCGCTGCAAGCGGCGCTCTTAGCCTGCAG 765
|.||.||||.| |.||||..|.|.||| |
BL03135 812 ATGCCGCACTTATCATCTTGTCCGTT---ATCGGCTATGTGAGC-----G 853
BSNT_02943___ 766 CTCCCCAGTGCCAGGCGCACAAAAC----GAAA------GAGAAAGAAG- 804
|| ||| |||...|.|||| |||| .|||||||.|
BL03135 854 CT------TGC--GGCATTCCAAACGCGGGAAATACGATCAGAAAGAGGC 895
BSNT_02943___ 805 --TGA 807
|||
BL03135 896 GTTGA 900
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