Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02943 and BL03135

See Amino acid alignment / Visit BSNT_02943 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:38
# Commandline: needle
#    -asequence dna-align/BSNT_02943___yndG.1.5803.seq
#    -bsequence dna-align/BL03135.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02943___yndG-BL03135.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02943___yndG-BL03135.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02943___yndG
# 2: BL03135
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1005
# Identity:     531/1005 (52.8%)
# Similarity:   531/1005 (52.8%)
# Gaps:         303/1005 (30.1%)
# Score: 1251.0
# 
#
#=======================================

BSNT_02943___      1 GTGAGGCAGAAA---CCGATTTATGTAGAAAT------------CGAAAT     35
                        |.|.|.|||   ||.||||||||||||||            .|||||
BL03135            1 ---ATGAAAAAAACTCCAATTTATGTAGAAATATCCATCCAGGCAGAAAT     47

BSNT_02943___     36 GAAATCTGATCTGGATACACTCTGGGAATATACACAAAACCCATCACTGC     85
                     |      ||.|.|      ||.|||...|||||.|||.|||||.|.||.|
BL03135           48 G------GAGCGG------CTATGGCGCTATACCCAAGACCCAACCCTCC     85

BSNT_02943___     86 ATAAGGAATGGGATCTCCGGTTTTCAAATATTACGTATTTGAATAGTCAG    135
                     ||..|.|||||||..|.||.|||.|..|.|||||.|||||.||..| |||
BL03135           86 ATCGGCAATGGGACTTGCGATTTACGGACATTACCTATTTAAAGCG-CAG    134

BSNT_02943___    136 -CCATGCGAAAAACAGAAGTTTCTT-TACGAAACAAGGGTAGGCTTTGGA    183
                      ||..|.|||...||| ||.||||| ||||||||.||..|.|||||.||.
BL03135          135 ACCGGGTGAACCTCAG-AGGTTCTTATACGAAACGAGAATCGGCTTCGGC    183

BSNT_02943___    184 TTAAAGGTGTCAGGTACAGGAGA---------AACCGTCCGTGTTTTCAA    224
                     |||||..|.||.||.||.||.||         ||.|||     .||||||
BL03135          184 TTAAAAATCTCCGGCACCGGGGAGTCTGCCGGAAACGT-----ATTTCAA    228

BSNT_02943___    225 CAAATGTTCATCT---GAAAG-GTCTTCTTCACT---GGCTTTTGGCT-C    266
                     .|.|       ||   ||.|| ||| ||.|||||   |    ||.||| |
BL03135          229 GATA-------CTGGAGACAGAGTC-TCGTCACTCAAG----TTCGCTAC    266

BSNT_02943___    267 TGATCATCCATTATCTCTGATTCGGCATGGAAGCGGCTACTGGAAGTATA    316
                     ..|.||.||..|.|||.|.|||||..|.|||||.||.||.|||||    |
BL03135          267 AAACCACCCGCTTTCTGTCATTCGCGAAGGAAGAGGATATTGGAA----A    312

BSNT_02943___    317 TACAGAGAGA---AAATGGGAAAATGACGTTTTTAACACAGTACCAATAC    363
                     |||||.||||   |||..||  |||.||||||.|.|||||.|||.|.|  
BL03135          313 TACAGCGAGAGCGAAACCGG--AATCACGTTTATGACACAATACGATT--    358

BSNT_02943___    364 AAAACAGCC--TACGGACTGCTGGGAAGATGGATTGATCGTTTAT--TAT    409
                     |..|||.||  |||||...|||||   |..||.|||  |...|||  .||
BL03135          359 ATGACACCCGTTACGGTAGGCTGG---GCCGGCTTG--CAGATATGGCAT    403

BSNT_02943___    410 TTCGGCCGCTGCTTGGCTGGGCGACTGCCTGGAGCTTTGATGCATTAAGG    459
                     |..|||||||.||.|||||||||||.||||||||.|||||||||.|.|.|
BL03135          404 TCAGGCCGCTCCTCGGCTGGGCGACGGCCTGGAGTTTTGATGCACTGAAG    453

BSNT_02943___    460 CTTTGGGTAGAGCAAAATAAA-------CATCCGAAGC-GCTT-------    494
                     .|||||.|.||       |||       |||||.|.|| ||||       
BL03135          454 ATTTGGCTTGA-------AAAAGGGCTCCATCCAAGGCTGCTTTTTCAAA    496

BSNT_02943___    495 ---CATTCGATCTGCTATCATCTATGTGTTCATGTGTCTGTTTTTCAGCC    541
                        ||||.|           |||||..|.||.|.||||||         |
BL03135          497 AAACATTGG-----------TCTATTGGCTCGTTTGTCTG---------C    526

BSNT_02943___    542 TGTTT---------TGGTTCTATCAAGGCTTTG-------------CAGG    569
                     |||||         |||.|.||.|||||..|||             ||.|
BL03135          527 TGTTTTCTTTCGTCTGGATTTACCAAGGGCTTGTTCCAAAGCTCATCATG    576

BSNT_02943___    570 --------TGTTGAAACAAGCA----------TTTT------GGCAG---    592
                             ||..||||..||||          ||||      |||.|   
BL03135          577 GCTCACCCTGGGGAAATCAGCATGCTTTCGGCTTTTACGGGCGGCCGTTT    626

BSNT_02943___    593 -------GAA---CAGCGGAG----ATAGGCTTAGC--------------    614
                            |||   |..|.|||    ||.||.|||||              
BL03135          627 CCATCCCGAAACGCTCCTGAGGCTTATCGGTTTAGCCGAGGTGATGGTCG    676

BSNT_02943___    615 -TATTTTGTGGCTGCTTCCTTT---AAAAAGAAAATGGATCATT---CAT    657
                      ..|.||.|||||...||||.|   .|||||.||.|||.|..||   |||
BL03135          677 GCGTGTTATGGCTTTATCCTGTTCGGAAAAGGAAGTGGTTTCTTCTGCAT    726

BSNT_02943___    658 GGTGTCCAGGCTTGTATTTTTGCTGGGTTTGCTTGTCTAGGTTCC----G    703
                     ...|||| .|||||      |||      ||||| ||| |..|||    |
BL03135          727 ATCGTCC-TGCTTG------TGC------TGCTT-TCT-GCCTCCGCGGG    761

BSNT_02943___    704 AA------ATAT----TCATGTG--GATTCTGTTGA-------GTG----    730
                     ||      ||||    ||.|.||  ||..||.||.|       |||    
BL03135          762 AATGGCTGATATCGCATCTTTTGCCGAACCTTTTAACCCGGTCGTGCTCA    811

BSNT_02943___    731 ---------------TGTTTTCCGCTGCAAGCGGCGCTCTTAGCCTGCAG    765
                                    |.||.||||.|   |.||||..|.|.|||     |
BL03135          812 ATGCCGCACTTATCATCTTGTCCGTT---ATCGGCTATGTGAGC-----G    853

BSNT_02943___    766 CTCCCCAGTGCCAGGCGCACAAAAC----GAAA------GAGAAAGAAG-    804
                     ||      |||  |||...|.||||    ||||      .|||||||.| 
BL03135          854 CT------TGC--GGCATTCCAAACGCGGGAAATACGATCAGAAAGAGGC    895

BSNT_02943___    805 --TGA    807
                       |||
BL03135          896 GTTGA    900


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