Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03106 and BL03134
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:46
# Commandline: needle
# -asequence dna-align/BSNT_03106___yobS.1.5803.seq
# -bsequence dna-align/BL03134.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03106___yobS-BL03134.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03106___yobS-BL03134.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03106___yobS
# 2: BL03134
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity: 358/655 (54.7%)
# Similarity: 358/655 (54.7%)
# Gaps: 161/655 (24.6%)
# Score: 767.0
#
#
#=======================================
BSNT_03106___ 1 ATGTCACCAAGAATAGGTTTGACCCA-AAAAATG-ATTA-TAGACGCTGC 47
.||||.||..||||.||||||| | |||.|.| |.|| |.||.|||||
BL03134 1 TTGTCTCCGCGAATCGGTTTGA---ATAAAGACGCAGTATTGGAAGCTGC 47
BSNT_03106___ 48 AGCGGAGATTGCCGATCAGGAAGGGGTAAATGGTGTCTCACTTGCGGCAC 97
.||.|...|.||.|||.|||||||..|..|||..||..|.|||||..|||
BL03134 48 TGCAGCTCTGGCTGATGAGGAAGGCATTCATGAAGTGACGCTTGCTTCAC 97
BSNT_03106___ 98 TTTCTAAAAAAATGAATGTGCGTC----CCCCGTCATTGTATAACCATAT 143
||||.||||...||||| ||| |.|||||..||||.||.|||||
BL03134 98 TTTCCAAAAGGCTGAAT----GTCAAATCTCCGTCTCTGTACAATCATAT 143
BSNT_03106___ 144 CAACGGGCTGCAAGCGA-TCAGAGCA-GAACTTGCTGTTAGAGGACTGAC 191
.||.||..|| |.||| |.|..|.| |||||.||..||...||..||||
BL03134 144 AAAAGGATTG--AACGACTTACGGAAGGAACTCGCACTTTACGGCTTGAC 191
BSNT_03106___ 192 AAAGCTTTTTGATCAAATGGCGGACTCCG--TAACCGAA----CGAAAGG 235
.|..||||.|||..|.|||| ||.|| ||.||..| ||||
BL03134 192 GATTCTTTATGAAAACATGG----CTTCGGCTATCCAGAGAGCCGAA--- 234
BSNT_03106___ 236 GAGATTCCGCGATGCTTTC-----TTTAGCACATGCATATGTTGATTTTG 280
|||..|| |.|||.|| ..|.||.|||||.|||.|.|.|||||
BL03134 235 GAGGATC----AGGCTGTCAGCCAAATGGCTCATGCCTATCTCGCTTTTG 280
BSNT_03106___ 281 CAATTGAAAA---TCCCGGATATTATGAAGCGGCTCTGCTT--AAGGTTC 325
|.| |||| .||.||...|||||||||..||.|..|| || |.|
BL03134 281 CCA---AAAACAGACCGGGGCTTTATGAAGCAACTTTTATTGCAA--TGC 325
BSNT_03106___ 326 AGGACAAACGGATGGAAATCGTCTCTGACCAAATTGTCTGTCTTGTGACG 375
..||..|| |||||| ||.|| ||||.| |.||.|.|||.
BL03134 326 CCGATGAA--GATGGA---CGGCT-TGACGA--------GGCTGGAGACA 361
BSNT_03106___ 376 AA-----------GCTGCT---CAT--TGAAAACGGCTATGCA---AG-T 405
.| |.|||| |.| ||||| |.|||| || || |
BL03134 362 GAGTCCTCGCCTTGGTGCTTTCCGTTCTGAAA--GACTAT-CATTTAGAT 408
BSNT_03106___ 406 GA-AAAGACTGCCATTCATGCGACAAGGGGGCTCAGAAGCCTGCTGCATG 454
|| .||| |.||.|||||||||...||.||..|.||||||.|.|||||||
BL03134 409 GATGAAG-CCGCGATTCATGCGGTCAGAGGCTTGAGAAGCATCCTGCATG 457
BSNT_03106___ 455 GCTTTACTGTTTTAATC--GCAA-AAGAAGCATTTGAACG---------- 491
|.|||.|.| .|.|| |||| |.||.||.|| ||
BL03134 458 GATTTGCCG---CACTCAGGCAACACGATGCGTT----CGGTCTTCCTTA 500
BSNT_03106___ 492 TGAGGAGGACATTTTAGAAAGCCTGTCAT-TTTCAATTCG---------- 530
|||.|..|| ||||||.|| |.|| |..||||.||
BL03134 501 TGATGTAGA------AGAAAGTCT-TGATCTGACAATCCGCGTCTTCTTA 543
BSNT_03106___ 531 ---GACATTTTTGTCAGGATTAT------TAATAAATAATAAAAATATTA 571
|.||||..|||| ||| .|||||
BL03134 544 AAAGGCATTGCTGTC-----TATCAGACCGAATAA--------------- 573
BSNT_03106___ 572 TGTAA 576
BL03134 573 ----- 573
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