Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03107 and BL03133
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_03107___yobT.1.5803.seq
# -bsequence dna-align/BL03133.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03107___yobT-BL03133.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03107___yobT-BL03133.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03107___yobT
# 2: BL03133
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity: 485/754 (64.3%)
# Similarity: 485/754 (64.3%)
# Gaps: 92/754 (12.2%)
# Score: 1348.0
#
#
#=======================================
BSNT_03107___ 1 ATGAGAATTACTCAGTACCAAACGGTTTGGCAGCTGACTTTTTTTCCAGC 50
|||||.||.||.|..|...||.|.||||..||||||||||||||||| ||
BL03133 1 ATGAGGATGACCCGATTTGAATCTGTTTACCAGCTGACTTTTTTTCC-GC 49
BSNT_03107___ 51 A-TTGTTTCCGGTTAATTGCTATTTAGTAGAGGAAGAAAACGAAGTC--A 97
| .|.|||||.||.||.||.|||||||..||.||||||.||| ||| |
BL03133 50 ACATATTTCCTGTCAACTGTTATTTAGCCGATGAAGAAGACG--GTCTAA 97
BSNT_03107___ 98 CCCTTATTGATGCCGCACTGCCAGGCAGCTATAAAGGGATTATTCAA-GC 146
|..|.||||||.|.|...|.||...||||.|.|..|||||| ||.|| ||
BL03133 98 CATTAATTGATACAGGGATTCCGATCAGCAAAACCGGGATT-TTAAAGGC 146
BSNT_03107___ 147 TGTGAATCAGCTTGGAAAACCGCTTCAGCATATTTTACTGACTCATGCAC 196
||.|.||||.||..|.||.|||.||.|||..|||||.|||||.|||||.|
BL03133 147 TGCGGATCACCTCCGCAAGCCGATTAAGCGGATTTTGCTGACCCATGCCC 196
BSNT_03107___ 197 ATGGGGACCATGTCGGATCACTGGA-------TACATTGGCACAAACATT 239
|..|.|||||||||||.||.||.|| ||| ||||..| |
BL03133 197 ACAGCGACCATGTCGGTTCGCTTGACGCGCTGTAC-----CACAGCC--T 239
BSNT_03107___ 240 TCCGCATGCAAAG--GTCATGATCTCGGAACGGGATTCA-TTCTTGCTCC 286
||||..||..||| |||| ||.||.|||||||||.|| .|| ||.|..
BL03133 240 TCCGGGTGTGAAGGTGTCA--ATATCTGAACGGGATGCACGTC-TGTTAA 286
BSNT_03107___ 287 AAGGTGACACATCCTTGCGGCAAGATGAGCCGCAGACGCCTATA---AAA 333
||||.||.|||....|||.|.|||..||| |||.|| ||| |||
BL03133 287 AAGGCGATACAAAGATGCTGGAAGGGGAG-CGCGGA-----ATAATCAAA 330
BSNT_03107___ 334 GGAGGTATTCCGAAACACATACAA-ACAAAGCCTCACCAAC-TGCTGACG 381
|||||..||||||||.|||| ||| |||||.|||.| .|.| |..|.|.|
BL03133 331 GGAGGCGTTCCGAAAAACAT-CAAGACAAATCCTGA-TATCTTTTTAAAG 378
BSNT_03107___ 382 GGCGGTGAAACAATTGGTTCTCTGCTTGCCATTCCAACACCGGGCCATAC 431
|..||.||.|.|||.|||||..||||..|..||.||.||||.||.|||||
BL03133 379 GAAGGAGACAGAATCGGTTCATTGCTGACTGTTTCATCACCCGGGCATAC 428
BSNT_03107___ 432 ACCGGGCAGCATGTCATTTCTTGATACAAGAAACGGCACTT-TAATAGCA 480
.||.||||||||.||.|||.|||||..|||||.|||| ||| |.||||..
BL03133 429 GCCTGGCAGCATTTCGTTTTTTGATGAAAGAAGCGGC-CTTCTCATAGTC 477
BSNT_03107___ 481 GGAGATGCGTTTCAGTTGCGCG--GAGGAATCGCTGTATCAGGTCAGATA 528
||.|||||||..|| |.|||| |.||.||..|.|||||.||.||..||
BL03133 478 GGTGATGCGTACCA--TACGCGAAGCGGCATGACGGTATCGGGGCATTTA 525
BSNT_03107___ 529 AAATGGACGTTTCCTTTTCCCGCCTTCGCCACATGGAATAAGGAGGAGGC 578
||.....|.|||||||||||.||.||.|||||||||.|.||.||....||
BL03133 526 AAGCTTTCATTTCCTTTTCCGGCTTTGGCCACATGGGACAAAGAAATCGC 575
BSNT_03107___ 579 CATCAAAAGCGCACAATTGCTCGCCGAT---------AAGGCGCCTTCCT 619
..|..|||||||||||..|||....||| ||||||
BL03133 576 TTTAGAAAGCGCACAAAAGCTGTTAGATTTAAAACCAAAGGCG------- 618
BSNT_03107___ 620 GTCTCGCTGTCGGACATGGAAA---TTTCCTGAGATCACCCG---CAGAG 663
||.||.|.|||.||.||..| |.||| ||.|.||| || ||
BL03133 619 --CTTGCCGCCGGCCACGGCGATCTTGTCC----ATGATCCGGCTCA-AG 661
BSNT_03107___ 664 CGGATGAGACA---GGCAATCCAA---------AAAGCAAA---GAAAGG 698
| |||||.|.| ||.||.|.|| |||..||| ||||||
BL03133 662 C-GATGAAAAAAGCGGTAAACGAAGCATACATCAAATTAAACAGGAAAGG 710
BSNT_03107___ 699 ATGA 702
||||
BL03133 711 ATGA 714
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