Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03108 and BL03132
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_03108___yobU.1.5803.seq
# -bsequence dna-align/BL03132.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03108___yobU-BL03132.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03108___yobU-BL03132.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03108___yobU
# 2: BL03132
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 550
# Identity: 320/550 (58.2%)
# Similarity: 320/550 (58.2%)
# Gaps: 143/550 (26.0%)
# Score: 791.0
#
#
#=======================================
BSNT_03108___ 1 ATGGGCTTTTCACATAT---AACACACTTAGACCGGAAACG--ATTTGCC 45
|||.|||||||.|||.| ||.|| ||| .||.||.| |||...|
BL03132 1 ATGAGCTTTTCTCATTTCGAAAAAC----AGA-AGGCAAAGTTATTCAGC 45
BSNT_03108___ 46 GGACTGTCACAACG-GACAAGCAACGCACTGGAAATG-----ACGGAAGA 89
||..|.|| ||.|| .||||||||| || ||||| ||.||| |
BL03132 46 GGGGTATC-CACCGTAACAAGCAAC-CA----AAATGAAGCAACCGAA-A 88
BSNT_03108___ 90 AAGG-AGGATTCCGGCACTGTGGGACCAATT------CTGGAAG----CA 128
|||| |..|||||..|..||||| |.|| .||.||| |.
BL03132 89 AAGGTAAAATTCCTTCCATGTGG----AGTTTATACCGTGAAAGATTTCC 134
BSNT_03108___ 129 GGAT-ATGAGCGCTCTTTTATCACAGG--CTGAA-AAAGACAAGAGCATT 174
|.|| |.||.||| |||| .|||| |.|||.|.|
BL03132 135 GCATAAGGAACGC----------CAGGACATGAAGAGAGATACG------ 168
BSNT_03108___ 175 ATTGC-CTTATATTCGAATTATGA---ACAAGAGACGA-ATGGGTTTTAT 219
||||| ||| |||||..||||||| ..|||| | |||||...|||
BL03132 169 ATTGCGCTT-TATTCAGATTATGAGTCGGAAGA----ATATGGGGCGTAT 213
BSNT_03108___ 220 ACGTTTTCAGTCGGAACGTT------TCAG---GAATACGACGACATTCT 260
||.||||||.||||.||||| |||| |||.|.|
BL03132 214 ACATTTTCAATCGGTACGTTCGCTGATCAGCATGAAAAAG---------- 253
BSNT_03108___ 261 TCCGGGACCATATGAAAACATTGATT----TGCCGGCTTCCGCTTACGCC 306
||| ||| ||| ||||| |.||.||.||||..||.|||
BL03132 254 --CGG--CCA-ATG-------TGATTTCGCTCCCTGCATCCGAATATGCC 291
BSNT_03108___ 307 GTTTTCACTTCCA-------GAATCGGTCCTATTGAAGAGATTGTGCTTG 349
|||||...|||.| || || ||.||||||.|.|||.|||
BL03132 292 GTTTTTGTTTCAAGGCGGGGGA---GG----ATCGAAGAGGTCGTGTTTG 334
BSNT_03108___ 350 AAACGTGGAAGGAAATTTGGACTTGGGATAAGCGGCATCTGCGCACGTTT 399
|.||.|||.||||.||||||||.||||.|.||....||||.||.||.|.|
BL03132 335 AGACTTGGCAGGAGATTTGGACATGGGCTGAGAAAAATCTCCGTACATAT 384
BSNT_03108___ 400 ACAGGTGATTTTGAGATGTA---TGATCAAAGTGCCGCAGT---ACCACA 443
||.||.||||.|||..|.|| |||.||| ||||| .||
BL03132 385 ACCGGAGATTATGAAGTTTATGGTGAACAA------GCAGTGAATCC--- 425
BSNT_03108___ 444 GCGA----GCACAAGTTAACATTTATGTAG----CGAT--AAAAAAATAA 483
||| ||.||||||..|||||||.|.| |||| ||||||||||
BL03132 426 -CGAAAATGCTCAAGTTGCCATTTATATTGCTGTCGATCGAAAAAAATAA 474
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