Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03110 and BL03130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_03110.1.5803.seq
# -bsequence dna-align/BL03130.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03110-BL03130.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03110-BL03130.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03110
# 2: BL03130
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1213
# Identity: 622/1213 (51.3%)
# Similarity: 622/1213 (51.3%)
# Gaps: 374/1213 (30.8%)
# Score: 1716.0
#
#
#=======================================
BSNT_03110 1 ATGCTTATCCGGTCAGAAATAGTAGCTGAAATAAATACTGAACACAAAAA 50
BL03130 0 -------------------------------------------------- 0
BSNT_03110 51 AGAAGGGGAAACCCCTGTTTTCATAGCATATGCAAGGTGTATTCCGCCGC 100
BL03130 0 -------------------------------------------------- 0
BSNT_03110 101 ATAATAGATATGCCCAAGCTTTATCAAAATGTTATGATTGTTTTTGTTGG 150
BL03130 0 -------------------------------------------------- 0
BSNT_03110 151 AAAATACAAGAAGAAAAGGTGCGCAGAATGAAACTGGAACGTTTGTTAGC 200
.|||||.|.||.||..|.||.||
BL03130 1 ---------------------------GTGAAAATTGACCGGCTTTTGGC 23
BSNT_03110 201 GATGGTTGTGTTATTGATCAGCAAAAAACAAGTGCAGGCTGCAGAGCTTG 250
.||.||..|.||||||||.|..|||...|||||||||||....|||||||
BL03130 24 CATTGTGATTTTATTGATTAATAAACGCCAAGTGCAGGCAAAGGAGCTTG 73
BSNT_03110 251 CTGAGC-TGTTTGAAGTATCTGTCAGAACAATTTACCGTGATATTGAGAC 299
|.| || ||||.|||||.|||||||||||.|||||.||.|||||||||.|
BL03130 74 CCG-GCATGTTCGAAGTCTCTGTCAGAACGATTTATCGGGATATTGAGGC 122
BSNT_03110 300 GATCAATAGGGCTGGTATTCCGATTGTGACCTCACAGGGTTCCGGGGGCG 349
||||||...|||.||.|||||||||||.|||||||||||..|.||.||||
BL03130 123 GATCAACCAGGCGGGCATTCCGATTGTCACCTCACAGGGAGCAGGAGGCG 172
BSNT_03110 350 GAATTGGCATCATGGAAACGTATCGGCTTGAAAGAGAGTGGCTG-AAGGA 398
|.||..||||||||||...||.||||||.||||...||..|||| .||.|
BL03130 173 GGATCAGCATCATGGAGCGGTTTCGGCTCGAAAATAAGCTGCTGTCAGCA 222
BSNT_03110 399 GGAGGAATTGTTTGCAATTGCTTCCGCTTTGCAAAGCGTTTCATCTATGT 448
||.|||.||...||.|||.|..|.||||||.||||||||||.||.|.||
BL03130 223 -GACGAACTGGCGGCCATTACGACGGCTTTGGAAAGCGTTTCCTCGACGT 271
BSNT_03110 449 ATGAA-----CCAATTTCTCACAGCACAGC-CTATCAAAAAATC------ 486
|.||| ||| ||||.|..|.|| || |.||||||||
BL03130 272 ACGAAGTGCTCCA-----TCACGGGTCTGCACT-TGAAAAAATCCGGTTT 315
BSNT_03110 487 ----------------AAACACCTTATACCTGAGCAATCTGCTCAAGCAT 520
|||..|| |.||| |.|.||||
BL03130 316 CTCGTTTCGGAAGAAGAAATGCC----------GGAAT-TCCGCAAG--- 351
BSNT_03110 521 TTAAGCACCAAACAGAAAAATGGTTTATTGACATGACGGCATGGGGCCAT 570
.||||.||||||||||||.|||||||..|..|.|||||..|.
BL03130 352 --------AAAACGGAAAAATGGTTTGTTGACATCTCTTCCTGGGGAGAA 393
BSNT_03110 571 A--CCGAGGATCAAA------AGGCGCTT-----------CGTGAGAAAA 601
| ||....|||||| |..||||| |||.|||
BL03130 394 AGTCCTGTCATCAAAGAAAAGATCCGCTTGCTGGATGAAGCGTCAGA--- 440
BSNT_03110 602 TCAGCGC-CGCCATCGATCGGTTGTCAACGATATCTTTTACATAT----A 646
||||.| || || ||.|.||.||||..||| |
BL03130 441 -CAGCACGCG---------GG-------CGGTCTCCTTTAATTATGTGGA 473
BSNT_03110 647 CA-AGCGCAAGCGG------GGAAACACTTCTTCGTGAAA-CTGAACCTT 688
|| || ||.|| |||||.| .|||| |.||.||..
BL03130 474 CAGAG----AGGGGCAGACCGGAAAAA--------GGAAAGCGGAGCCGC 511
BSNT_03110 689 ATACATTGGTTTGCAAGGCGGGGCACTGGTATTTATATGCCTACTGCCTG 738
||||..|.||....||||...|||||||||||||.|||||.|.|||||||
BL03130 512 ATACCCTCGTCCTAAAGGGAAGGCACTGGTATTTGTATGCTTTCTGCCTG 561
BSNT_03110 739 GTAAGAAATGATTTTCGTTTTTTTAAACTAAACCGGATGAAAGATCTGGC 788
...|||.|.|..|||||.||.||||||||....|||||||||||..||..
BL03130 562 AAGAGACAGGCGTTTCGCTTCTTTAAACTGTTGCGGATGAAAGACGTGCG 611
BSNT_03110 789 TAT-CTT--ACATCAGACCTTTATCAGAAAAGACATTC-AGCTG--GACA 832
.|| ||| |.|..|| |||...|||||.|| |.|| |.||| ..||
BL03130 612 GATGCTTGAAGAAAAG---TTTGAAAGAAAGGA-AGTCGATCTGTCTTCA 657
BSNT_03110 833 CTTTGCCATGGGATAGAAAT--TGGTACCAGAAGGGCCGTTTAACTGAAT 880
||| ||.|||| |||.|| ||||||.|...||.|..|.|.||.||
BL03130 658 CTT--CCTTGGG--AGACATCGTGGTACAAACCGGACAATATGACCGA-- 701
BSNT_03110 881 TGGTTA---TTCTTGTTCAGCCGGCAGCACGTCAGCGTAT-----AGGTG 922
|||.| ||||..||.||||| .||..||.||.| |.|.|
BL03130 702 -GGTGACCCTTCTCATTAAGCCG-----TCGGGAGAGTCTTTGGCAAGAG 745
BSNT_03110 923 AATGGTTCGGATATGATGTCCT-TCACTGTGAGGAAGATGAAATC----- 966
||||||||||.|..||.| || ||||| .||||||.|
BL03130 746 AATGGTTCGGCTCAGAAG--CTCTCACT--------TATGAAAACGGACA 785
BSNT_03110 967 -TGCCGGGCAGTGATTTCACTTCCAGAAGATCAATGGCTGATCGGTTTTT 1015
|||..||||...|||||...|||.|||||||||||||||..|||.|||.
BL03130 786 ATGCGTGGCAACCATTTCTTATCCGGAAGATCAATGGCTGTACGGATTTC 835
BSNT_03110 1016 TGCTCCAGTTCGGAAAGGATATTGAGGTTCTGCAGCCTCTTCATATACGG 1065
|||||||.||.||||...||||.||.|||||..|.||||.||..||.||.
BL03130 836 TGCTCCAATTTGGAACCCATATCGAAGTTCTCGATCCTCCTCGCATCCGT 885
BSNT_03110 1066 GATAGAGTAAAAGAAACCATTCATCACAT-GCAAAAAA-----------T 1103
.|.|.|.|||||| ||.| ||||||.| |
BL03130 886 CAAAAAATAAAAG------------ACTTGGCAAAACAAATTGTACATTT 923
BSNT_03110 1104 ATATGAAACCTGA 1116
|||.|||||||||
BL03130 924 ATACGAAACCTGA 936
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