Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05790 and BL03106
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05790___spsJ.1.5803.seq
# -bsequence dna-align/BL03106.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05790___spsJ-BL03106.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05790___spsJ-BL03106.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05790___spsJ
# 2: BL03106
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1189
# Identity: 561/1189 (47.2%)
# Similarity: 561/1189 (47.2%)
# Gaps: 455/1189 (38.3%)
# Score: 997.0
#
#
#=======================================
BSNT_05790___ 1 ---------ATGGCAAA-----------ATCATA-TTTAATTACAGGCGG 29
|||.||.| |.|||| |||.||.||.|||||
BL03106 1 ATGAGCGATATGACAGAGTTATCCGGCCAGCATATTTTCATAACTGGCGG 50
BSNT_05790___ 30 AGCCGGCTTCATCGG--GCTCACGTTTA----CAAAGCTCATGCTGAGGG 73
|||.|||||.||||| .||| |||| .||||||.|| .|||.|
BL03106 51 AGCAGGCTTTATCGGATCCTC---TTTAATAGGAAAGCTGAT--AGAGCG 95
BSNT_05790___ 74 AAACGGATGCGCGCATTACCGTTTTAGA-------TAAACTGACGTACGC 116
.||| .||.|.|||||.|..|| |.||..|||...|.|
BL03106 96 CAAC-------AGCGTCACCGTATATGACAATTTTTCAAGAGACTCCCTC 138
BSNT_05790___ 117 C------AGCC--ACCCGGAGGAAATGGAAAAATTAAAGCAAAACAGCCG 158
| |||| |||.||| ||.
BL03106 139 CGGTATAAGCCTTACCGGGA---------------------------CCA 161
BSNT_05790___ 159 TTTTCGCTT-----TG-TGAAAGGGGACATCAGCGTTCAGGAGGATATCG 202
|..||.||| || ||.|.||.||||| || .|||| |.|
BL03106 162 TCCTCACTTGAAAGTGCTGCAGGGAGACAT-----TT----TGGAT-TTG 201
BSNT_05790___ 203 ACCGCGCGTTTGATGAGACCTACGAT----GGCGTCATTCACTT------ 242
|.||||| ||.|..|| .|||| ||.|.||..|||.|
BL03106 202 AACGCGC--TTAAAAAG----GCGATCCAGGGGGCCAGCCACATTGTCCA 245
BSNT_05790___ 243 CGCAG-CAGAATCGCATG---TGGACAGAAGCATTTCCCAAGCAGAGCCG 288
|||.| |.|.||||| || |.||||....|||| || |.|.|||
BL03106 246 CGCCGCCGGCATCGC-TGGGATTGACACGGTCATT---CA---AAACCCG 288
BSNT_05790___ 289 TTTATCACCA-------CAA-ATGTCATGGG----GACATACCGATTG-- 324
.|||..||.| ||| ||| ||.|| |.||..|.|.|||
BL03106 289 GTTAAAACGATGCAGGTCAACATG--ATCGGTTCAGCCAATCTGCTTGAA 336
BSNT_05790___ 325 GCGGAAG-CGGTCTT----GAAAGGAAAAGCCAAGAAGCTGATTCATATT 369
||||..| |||| || |||.|.||||| .|.|| || |.||
BL03106 337 GCGGCTGCCGGT-TTAACCGAATGCAAAAG------GGTTG--TC-TGTT 376
BSNT_05790___ 370 TCA--ACAGATGAGGTATACGG------GGATTTAAAAGCGGATGATCCC 411
||| |||...||.||.|.||| .|.|||.|.|||| |
BL03106 377 TCAGTACAAGCGAAGTGTTCGGCCAAATCGCTTTCAGAGCG--------C 418
BSNT_05790___ 412 GCG----------------TTTA----------CAGAAACGACGCCGCTT 435
||| |||| .||||.| |||||
BL03106 419 GCGAGACCAGTCATACTGTTTTAGGAGCGGTGGGAGAAGC----CCGCT- 463
BSNT_05790___ 436 TCTCCTAATAACCCATACTCAGCCAGCAA-----------AGCAAGCTCT 474
...||||..|.|.|||||| |||| |.|
BL03106 464 ----------GGACATATGCTGTCAGCAAACTCGCCGAGGAGCA---TAT 500
BSNT_05790___ 475 G--ATTTGCTCGTGTTGTCTTATGTGAAAACCCACAA-----GCTTCCGG 517
| ||.|| |.|||.|.|| |.|| |||||||.
BL03106 501 GGCATATG----------CCTATTTTAA-----AGAACTTGGGCTTCCGA 535
BSNT_05790___ 518 CCATCA------------TTACACGATGCAGCAACAATTACGGACCTTAT 555
||.||| ||| ||| .|||.|||||..|.
BL03106 536 CCGTCACCGTCCGCCCTTTTA----ATG--------TTTATGGACCGGAA 573
BSNT_05790___ 556 CAGCACAGCGAA---------AAAATGATTCCGACGATTATCCGTCATGC 596
||...|.||||| ||| |||||..| |||
BL03106 574 CAAGTCGGCGAAGGCGCCATCAAA---------ACGATGGT---TCA--- 608
BSNT_05790___ 597 GAAGCAGGGCCTGCCTGTT-------CCGCTGTAT------GGCGATGGA 633
|||.|| .||||| |||.|.||| |||||||||
BL03106 609 ----CAGAGC---TCTGTTAGATGAGCCGATCTATATTCACGGCGATGGA 651
BSNT_05790___ 634 CTCCAGATCCGAGACTGGCTGTTTGCGGAGGAT--CATTGCCGCGCGATC 681
...||.|||||.|.|||| || ||.||.| ||| ||| ||||
BL03106 652 ACGCAAATCCGGGCCTGG-TG-TTACGTA-GATGACAT--------GATC 690
BSNT_05790___ 682 AAGCTGATTTT------------AGAAAAAGGGA-CCGACGGCGAGGTGT 718
.| |.||.||| .||..||||.| ||..|||.|| ||.|
BL03106 691 GA-CGGAATTTTGCGTTGTTTGACGATGAAGGAAGCCATCGGAGA-GTCT 738
BSNT_05790___ 719 AT-AACATCGGCGGCGGAAATGAACGCA----------CGAATAAAGAGC 757
.| ||||||||| |||||||||| ||.|||..|| .
BL03106 739 TTCAACATCGGC------AATGAACGCACTGTGATCACCGTATACGGA-T 781
BSNT_05790___ 758 TGG------CGAGTGTCA----TTTTGAAGCA---------------TCT 782
||| |||.|.||| |.|.|.|.|| |.|
BL03106 782 TGGCAAGCACGATTATCAGAGTTCTCGGATCAAAATCACAAATCTTCTTT 831
BSNT_05790___ 783 GGGCTGTGAGGAATTGTTCGCCCACGTGGAAGA--CCGAAAAGGGCATGA 830
||| |||.|| .|||| ||||.| .|||
BL03106 832 GGG----GAGAAA---------------AAAGAAGCCGATA-----TTGA 857
BSNT_05790___ 831 CCGGCGCTATGC----GATCAATGCATCAAAGCTGAAAAACGAACTGGGC 876
.|.|||| ||.| |.||||| ||||| ||||..|| .||
BL03106 858 ACTGCGC-ATCCCTCAGGTCAAT-----AAAGC--AAAAGAGA----TGC 895
BSNT_05790___ 877 TGGCGG---CAG----GAAG-TGACGT-TTGAAGAAGGCATTGCGCGTAC 917
| ||| ||| .||| ||| | |.||||||||||| |..|.
BL03106 896 T--CGGTTTCAGCGCTAAAGTTGA--TCTGGAAGAAGGCAT----CAGAA 937
BSNT_05790___ 918 GATTCAGTGGTA-----TACAGACAAT---GACCGATGA 948
|| .|||..|.| ||.|.|.||| ||.|.||.|
BL03106 938 GA-ACAGCTGAAAGCATTAAAAAAAATTTGGATCAATAA 975
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