Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05790 and BL03106

See Amino acid alignment / Visit BSNT_05790 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:52
# Commandline: needle
#    -asequence dna-align/BSNT_05790___spsJ.1.5803.seq
#    -bsequence dna-align/BL03106.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05790___spsJ-BL03106.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05790___spsJ-BL03106.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05790___spsJ
# 2: BL03106
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1189
# Identity:     561/1189 (47.2%)
# Similarity:   561/1189 (47.2%)
# Gaps:         455/1189 (38.3%)
# Score: 997.0
# 
#
#=======================================

BSNT_05790___      1 ---------ATGGCAAA-----------ATCATA-TTTAATTACAGGCGG     29
                              |||.||.|           |.|||| |||.||.||.|||||
BL03106            1 ATGAGCGATATGACAGAGTTATCCGGCCAGCATATTTTCATAACTGGCGG     50

BSNT_05790___     30 AGCCGGCTTCATCGG--GCTCACGTTTA----CAAAGCTCATGCTGAGGG     73
                     |||.|||||.|||||  .|||   ||||    .||||||.||  .|||.|
BL03106           51 AGCAGGCTTTATCGGATCCTC---TTTAATAGGAAAGCTGAT--AGAGCG     95

BSNT_05790___     74 AAACGGATGCGCGCATTACCGTTTTAGA-------TAAACTGACGTACGC    116
                     .|||       .||.|.|||||.|..||       |.||..|||...|.|
BL03106           96 CAAC-------AGCGTCACCGTATATGACAATTTTTCAAGAGACTCCCTC    138

BSNT_05790___    117 C------AGCC--ACCCGGAGGAAATGGAAAAATTAAAGCAAAACAGCCG    158
                     |      ||||  |||.|||                           ||.
BL03106          139 CGGTATAAGCCTTACCGGGA---------------------------CCA    161

BSNT_05790___    159 TTTTCGCTT-----TG-TGAAAGGGGACATCAGCGTTCAGGAGGATATCG    202
                     |..||.|||     || ||.|.||.|||||     ||    .|||| |.|
BL03106          162 TCCTCACTTGAAAGTGCTGCAGGGAGACAT-----TT----TGGAT-TTG    201

BSNT_05790___    203 ACCGCGCGTTTGATGAGACCTACGAT----GGCGTCATTCACTT------    242
                     |.|||||  ||.|..||    .||||    ||.|.||..|||.|      
BL03106          202 AACGCGC--TTAAAAAG----GCGATCCAGGGGGCCAGCCACATTGTCCA    245

BSNT_05790___    243 CGCAG-CAGAATCGCATG---TGGACAGAAGCATTTCCCAAGCAGAGCCG    288
                     |||.| |.|.||||| ||   |.||||....||||   ||   |.|.|||
BL03106          246 CGCCGCCGGCATCGC-TGGGATTGACACGGTCATT---CA---AAACCCG    288

BSNT_05790___    289 TTTATCACCA-------CAA-ATGTCATGGG----GACATACCGATTG--    324
                     .|||..||.|       ||| |||  ||.||    |.||..|.|.|||  
BL03106          289 GTTAAAACGATGCAGGTCAACATG--ATCGGTTCAGCCAATCTGCTTGAA    336

BSNT_05790___    325 GCGGAAG-CGGTCTT----GAAAGGAAAAGCCAAGAAGCTGATTCATATT    369
                     ||||..| |||| ||    |||.|.|||||      .|.||  || |.||
BL03106          337 GCGGCTGCCGGT-TTAACCGAATGCAAAAG------GGTTG--TC-TGTT    376

BSNT_05790___    370 TCA--ACAGATGAGGTATACGG------GGATTTAAAAGCGGATGATCCC    411
                     |||  |||...||.||.|.|||      .|.|||.|.||||        |
BL03106          377 TCAGTACAAGCGAAGTGTTCGGCCAAATCGCTTTCAGAGCG--------C    418

BSNT_05790___    412 GCG----------------TTTA----------CAGAAACGACGCCGCTT    435
                     |||                ||||          .||||.|    ||||| 
BL03106          419 GCGAGACCAGTCATACTGTTTTAGGAGCGGTGGGAGAAGC----CCGCT-    463

BSNT_05790___    436 TCTCCTAATAACCCATACTCAGCCAGCAA-----------AGCAAGCTCT    474
                               ...||||..|.|.||||||           ||||   |.|
BL03106          464 ----------GGACATATGCTGTCAGCAAACTCGCCGAGGAGCA---TAT    500

BSNT_05790___    475 G--ATTTGCTCGTGTTGTCTTATGTGAAAACCCACAA-----GCTTCCGG    517
                     |  ||.||          |.|||.|.||     |.||     |||||||.
BL03106          501 GGCATATG----------CCTATTTTAA-----AGAACTTGGGCTTCCGA    535

BSNT_05790___    518 CCATCA------------TTACACGATGCAGCAACAATTACGGACCTTAT    555
                     ||.|||            |||    |||        .|||.|||||..|.
BL03106          536 CCGTCACCGTCCGCCCTTTTA----ATG--------TTTATGGACCGGAA    573

BSNT_05790___    556 CAGCACAGCGAA---------AAAATGATTCCGACGATTATCCGTCATGC    596
                     ||...|.|||||         |||         |||||..|   |||   
BL03106          574 CAAGTCGGCGAAGGCGCCATCAAA---------ACGATGGT---TCA---    608

BSNT_05790___    597 GAAGCAGGGCCTGCCTGTT-------CCGCTGTAT------GGCGATGGA    633
                         |||.||   .|||||       |||.|.|||      |||||||||
BL03106          609 ----CAGAGC---TCTGTTAGATGAGCCGATCTATATTCACGGCGATGGA    651

BSNT_05790___    634 CTCCAGATCCGAGACTGGCTGTTTGCGGAGGAT--CATTGCCGCGCGATC    681
                     ...||.|||||.|.|||| || ||.||.| |||  |||        ||||
BL03106          652 ACGCAAATCCGGGCCTGG-TG-TTACGTA-GATGACAT--------GATC    690

BSNT_05790___    682 AAGCTGATTTT------------AGAAAAAGGGA-CCGACGGCGAGGTGT    718
                     .| |.||.|||            .||..||||.| ||..|||.|| ||.|
BL03106          691 GA-CGGAATTTTGCGTTGTTTGACGATGAAGGAAGCCATCGGAGA-GTCT    738

BSNT_05790___    719 AT-AACATCGGCGGCGGAAATGAACGCA----------CGAATAAAGAGC    757
                     .| |||||||||      ||||||||||          ||.|||..|| .
BL03106          739 TTCAACATCGGC------AATGAACGCACTGTGATCACCGTATACGGA-T    781

BSNT_05790___    758 TGG------CGAGTGTCA----TTTTGAAGCA---------------TCT    782
                     |||      |||.|.|||    |.|.|.|.||               |.|
BL03106          782 TGGCAAGCACGATTATCAGAGTTCTCGGATCAAAATCACAAATCTTCTTT    831

BSNT_05790___    783 GGGCTGTGAGGAATTGTTCGCCCACGTGGAAGA--CCGAAAAGGGCATGA    830
                     |||    |||.||               .||||  ||||.|     .|||
BL03106          832 GGG----GAGAAA---------------AAAGAAGCCGATA-----TTGA    857

BSNT_05790___    831 CCGGCGCTATGC----GATCAATGCATCAAAGCTGAAAAACGAACTGGGC    876
                     .|.|||| ||.|    |.|||||     |||||  ||||..||    .||
BL03106          858 ACTGCGC-ATCCCTCAGGTCAAT-----AAAGC--AAAAGAGA----TGC    895

BSNT_05790___    877 TGGCGG---CAG----GAAG-TGACGT-TTGAAGAAGGCATTGCGCGTAC    917
                     |  |||   |||    .||| |||  | |.|||||||||||    |..|.
BL03106          896 T--CGGTTTCAGCGCTAAAGTTGA--TCTGGAAGAAGGCAT----CAGAA    937

BSNT_05790___    918 GATTCAGTGGTA-----TACAGACAAT---GACCGATGA    948
                     || .|||..|.|     ||.|.|.|||   ||.|.||.|
BL03106          938 GA-ACAGCTGAAAGCATTAAAAAAAATTTGGATCAATAA    975


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.