Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01327 and BL03086

See Amino acid alignment / Visit BSNT_01327 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_01327___yfkD.1.5803.seq
#    -bsequence dna-align/BL03086___yfkD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01327___yfkD-BL03086___yfkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01327___yfkD-BL03086___yfkD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01327___yfkD
# 2: BL03086___yfkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 825
# Identity:     595/825 (72.1%)
# Similarity:   595/825 (72.1%)
# Gaps:          63/825 ( 7.6%)
# Score: 2134.5
# 
#
#=======================================

BSNT_01327___      1 ATGATGAAAAAGCTATTTCATTCCACACTTATCGTGTTGTTATTCTTTAG     50
                        |||||||||||.||...||..||.||.|..|.|||.||||.||||||
BL03086___yfk      1 ---ATGAAAAAGCTTTTGTGTTTTACGCTGACTGCGTTTTTATCCTTTAG     47

BSNT_01327___     51 TTTTTTCGGCGTTCAG--------CCCATCCACGCGAAAAAGCAGTTTAA     92
                     ||||||||..||.|||        |.||.||        ||||.|.|.||
BL03086___yfk     48 TTTTTTCGCTGTACAGGAAGCTGACGCAGCC--------AAGCCGATCAA     89

BSNT_01327___     93 GGTTCCTAATTCTGTCGCAAGCATTTCAAAGGAAAACACGTATCCGAATG    142
                     |.||||.|..||||||.|.|..|||||.||.||.|||||.||.||.||.|
BL03086___yfk     90 GATTCCAAGCTCTGTCACGAATATTTCCAAAGAGAACACATACCCTAACG    139

BSNT_01327___    143 CTTCGCAGGATCAGCCAATGCTTCAGCCGAGCAAGCTGGCAAAGGAATTG    192
                     |.||.|||||||||||.|.|||.|||||||||.|..|.||..|.||..||
BL03086___yfk    140 CCTCTCAGGATCAGCCGAGGCTGCAGCCGAGCGAATTAGCCGAAGAGCTG    189

BSNT_01327___    193 CT---------CGATCATT-CTGAGGTGAAGATTGAAAATCCGCATCTCA    232
                     ||         |||| ||| |         ||||||||||||||||||.|
BL03086___yfk    190 CTGAAAACAACCGAT-ATTGC---------GATTGAAAATCCGCATCTGA    229

BSNT_01327___    233 TCAAAATGCTGAATGAATCCAACATATCCGGCACACCGCTTGCAGTAGGG    282
                     |.||||||||||||||.||.|.|||.||||||||||||||.|||.|.||.
BL03086___yfk    230 TTAAAATGCTGAATGAGTCAAGCATTTCCGGCACACCGCTGGCAATCGGC    279

BSNT_01327___    283 TACCGGGCGACAATATTTCTCGGGAAATGGGCGCTCGGCTATGAATCAAA    332
                     ||.||||||||.||.|.|.|.||.|.|||||||||.||.||....||.||
BL03086___yfk    280 TATCGGGCGACGATTTATTTGGGCAGATGGGCGCTAGGTTACACCTCGAA    329

BSNT_01327___    333 TGAAACAGTCGCAAACTGGGAGTATAAAAAAATCAATACAAACCGTGCGG    382
                     ||||||.||.||.||||||||.||....||||||||.||||||||....|
BL03086___yfk    330 TGAAACCGTTGCGAACTGGGAATACCGCAAAATCAACACAAACCGCTTTG    379

BSNT_01327___    383 ATAACCGCGGCGGGAAAGAAACGGCTGAAATGCA-TTATGCCCAGGAACA    431
                     |.|||||.||||||||||.|.|.||.|||.| || .|||.||||||||||
BL03086___yfk    380 ACAACCGGGGCGGGAAAGCACCTGCAGAACT-CACGTATTCCCAGGAACA    428

BSNT_01327___    432 GCAGTACAGAGTGAAGGGCGGCCTGACAGCTAAAGTTCCAAATGCTGAAG    481
                     |..|..||.|.|.||.||||||.|.|||||.|||||||||||.||.||||
BL03086___yfk    429 GACGAGCAAAATCAAAGGCGGCTTAACAGCGAAAGTTCCAAAGGCGGAAG    478

BSNT_01327___    482 ATGTCAAAAGCATGATGATGCAAAAAGCAATGAAGAAAACGAACCTTCCG    531
                     |||||||||..||||||||||..|||||.|||.|.|||||.||.||.|||
BL03086___yfk    479 ATGTCAAAAATATGATGATGCTCAAAGCCATGGAAAAAACAAAGCTGCCG    528

BSNT_01327___    532 CTTGCATTTGAGAC---GGTCATTGGGGCT--GGCACAAAACGGGATCAG    576
                     ||.||.|||||.||   ||||     ||||  ||.||||||||.||||||
BL03086___yfk    529 CTCGCCTTTGAAACAGTGGTC-----GGCTCCGGTACAAAACGCGATCAG    573

BSNT_01327___    577 ATTTATAAAGTCGC-TCCTAAAAAAATCGGTTATTTACATGCATATGCAC    625
                     ||||||||||| || .||.||||||.|.||..|||||||.||.|||||||
BL03086___yfk    574 ATTTATAAAGT-GCAGCCGAAAAAACTGGGAAATTTACACGCCTATGCAC    622

BSNT_01327___    626 CGGCTGTGAATGAAAAAGGAAAAGTGACTTACGGAGAAGTGTACTTAGTG    675
                     |.||.||.|||||||||||||||||.||.|||||.|||||||||.|.||.
BL03086___yfk    623 CTGCCGTCAATGAAAAAGGAAAAGTCACCTACGGCGAAGTGTACATCGTA    672

BSNT_01327___    676 CTGAAAGGAAATAAACGAAAACTCGTCGTGAAAAATGTCACGTCACAGGG    725
                     .|.|||||.||.|||.||||.||.|||||.||||||.||||.||.||.||
BL03086___yfk    673 TTAAAAGGCAACAAAAGAAAGCTAGTCGTCAAAAATATCACCTCGCAAGG    722

BSNT_01327___    726 AATCGGCGCGTGGATTCCAGTTCAAGATCATGTCACGTTTGGTTTTCAGC    775
                     |||||||||.||||||||.||.||.|||||..|.||.||.||.|||||| 
BL03086___yfk    723 AATCGGCGCTTGGATTCCTGTACAGGATCACCTGACATTCGGCTTTCAG-    771

BSNT_01327___    776 TTTCCTCA-----CTGCCAAGATAA    795
                         ||||     |.|||.|.||||
BL03086___yfk    772 ----CTCAGCCATCAGCCGAAATAA    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01327 and BL03086

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
