Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01313 and BL03080

See Amino acid alignment / Visit BSNT_01313 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_01313___yfkM.1.5803.seq
#    -bsequence dna-align/BL03080___yfkM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01313___yfkM-BL03080___yfkM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01313___yfkM-BL03080___yfkM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01313___yfkM
# 2: BL03080___yfkM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 528
# Identity:     386/528 (73.1%)
# Similarity:   386/528 (73.1%)
# Gaps:          21/528 ( 4.0%)
# Score: 1391.5
# 
#
#=======================================

BSNT_01313___      1 ATGGGGAAAAAAATTGCAGTTGTTTTAACAGATTATTTTGAGGACAGCGA     50
                     |||.|.||||||||||||||||||.|.||||||||.||||||||....||
BL03080___yfk      1 ATGAGCAAAAAAATTGCAGTTGTTCTGACAGATTACTTTGAGGATTCGGA     50

BSNT_01313___     51 GTACACTGAGCCTGCGAAAGCCTTTAAAGAAGCGGGACATGAACTGACTG    100
                     |||.||.||||||||||||||.||.|||||.||.|||||..|.||.||.|
BL03080___yfk     51 GTATACCGAGCCTGCGAAAGCGTTCAAAGACGCCGGACACCAGCTTACGG    100

BSNT_01313___    101 TCATCGAAAAAGAAAAAGGAAAAACAGTAAAAGGCAAGCAGGGAAAAGCG    150
                     |.||.||||||||||||||.|||||..|.||||||||.||.||..|.|||
BL03080___yfk    101 TTATTGAAAAAGAAAAAGGCAAAACGCTGAAAGGCAAACAAGGCGAGGCG    150

BSNT_01313___    151 GAAGTG---ACGGTTGACGCGTCCATTGACGACGTAAACCCTTCAGACTT    197
                     .|||||   ||   .||.||||||||||||||.||.|.|||..|.||.||
BL03080___yfk    151 CAAGTGGAAAC---AGATGCGTCCATTGACGAAGTCAGCCCGGCTGATTT    197

BSNT_01313___    198 TGATGCGCTTTTGATTCCCGGAGGATTTTCACCAGACCAGCTTCGCGCTG    247
                     |||.||..|.||||||||.||.||||||||.||.||....|||.|.||.|
BL03080___yfk    198 TGACGCATTGTTGATTCCGGGCGGATTTTCGCCGGATATTCTTAGAGCCG    247

BSNT_01313___    248 ACGATCGTTTCGTCCAATTTACAAAAGCGTTTATGACTGACAAAAAACCG    297
                     ||.|.||||||||....|||.|||||.|.||||||..|||||||||||||
BL03080___yfk    248 ACCAGCGTTTCGTATCGTTTGCAAAATCCTTTATGGATGACAAAAAACCG    297

BSNT_01313___    298 GTATTCGCCATTTGCCACGGCCCGCAGCTTTTAATCAATGCGAAAGCGCT    347
                     ||.||.||.||.|||||||||||||||||||||||||..||.||.||.||
BL03080___yfk    298 GTGTTTGCGATCTGCCACGGCCCGCAGCTTTTAATCACCGCCAAGGCTCT    347

BSNT_01313___    348 CGACGGCCGAAAAGCGACGGGCTATACGTCCATTCGTGTTGACATGGAAA    397
                     .|||||.||....|||||.|||||.||.||.||||..||.||..||||||
BL03080___yfk    348 GGACGGTCGCGGTGCGACAGGCTACACATCGATTCAAGTCGATTTGGAAA    397

BSNT_01313___    398 ACGCCGGTGCCGACGTTGTGGACAAGGAAGTGGTTGTTTGCCAGGATCAA    447
                     |||||||.|.|.|..||..||||.|||||||.||.||.||||||.|.||.
BL03080___yfk    398 ACGCCGGGGTCAAATTTAAGGACGAGGAAGTTGTCGTCTGCCAGAACCAG    447

BSNT_01313___    448 TTGGTCACTAGCCGCACACCGGAAGATATACCGGCATTTAACCGCGAGTC    497
                     .|.|||||.|||||.||.||.||.||.||.||.||.||||..||.||.||
BL03080___yfk    448 CTTGTCACAAGCCGGACGCCTGACGACATCCCTGCGTTTACACGAGAATC    497

BSNT_01313___    498 ATTG--GCATTGCT----TGAGAAATAA    519
                     .|||  ||  ||||    |||       
BL03080___yfk    498 TTTGAAGC--TGCTCGGCTGA-------    516


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