Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05798 and BL03075
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05798___spsC.1.5803.seq
# -bsequence dna-align/BL03075___spsC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05798___spsC-BL03075___spsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05798___spsC-BL03075___spsC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05798___spsC
# 2: BL03075___spsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity: 679/1370 (49.6%)
# Similarity: 679/1370 (49.6%)
# Gaps: 460/1370 (33.6%)
# Score: 1348.5
#
#
#=======================================
BSNT_05798___ 1 ATGGTGCAAAAGAGAAATCATTTTCTCCC-TTACTCATT----GCCGTTA 45
||.| |||| |||.|||.| ..|||.|
BL03075___sps 1 ----------------ATGA-----TCCCGTTAGTCAATTTAAAACGTCA 29
BSNT_05798___ 46 AT------CGGTAAGGAAGAAATTCAGGAGGTTACAGAAACGCTTGAATC 89
|| |.||| ||| |||||..||..|.||..|.||||| |
BL03075___sps 30 ATTTCAAACAGTA------AAA--CAGGATATTTTAAAAGAGTTTGAA-C 70
BSNT_05798___ 90 --GGGATGG--------CTTTCTAAA---GGCCCGAAGGTTCAGCAGTTT 126
|.|.||| |..|.||.| ||.||.||||||.|..|.||.
BL03075___sps 71 ATGTGCTGGACAGCGGCCAATATATATTGGGGCCAAAGGTTGAAGAATTA 120
BSNT_05798___ 127 GA-AAAAGAGTTTGCCGCGTTTG------TCGGGGCGAAGCACGCCGTGG 169
|| ||||||.| .|| || |.||.|..||..|.||.||.|
BL03075___sps 121 GAGAAAAGAAT----AGC---TGAAAAGCTTGGTGTAAAAGAAGCGGTCG 163
BSNT_05798___ 170 CGGT------------GAATTCAT--GTACCGCAGCTTTA--TTTTTGGC 203
|||| |.||.||| ||.|.|..||||.| .|||.|||
BL03075___sps 164 CGGTCGCCAACGGAACGGATGCATTGGTGCTGACGCTTGAAGCTTTCGGC 213
BSNT_05798___ 204 TTTGAAAGCAAAAGGGATCGGGCCCGGGGACGAGGTCATTACCTCTCCGC 253
.|.| ||||| |||||.||.||.|||||..|.|||.
BL03075___sps 214 ATCG---GCAAA-------------GGGGATGAAGTGATTACGACCCCGT 247
BSNT_05798___ 254 TTACGTTCAGCTCGACCGCC-AATACGATTATTCATACGGGAGCGACG-- 300
|.||.||...|.|.|||||| ||..|| ||..|.|||.|.| |
BL03075___sps 248 TCACTTTTTTCGCCACCGCCGAAGCCG-----TCTCAAGGGTGGG--GGC 290
BSNT_05798___ 301 ----CCTGTGTTTGCGGATATTGA--CCAAAACACGCT-CAATATTGACC 343
|||||||||||.|||.|.|| |..||||| | ||||.||||.|
BL03075___sps 291 TGAACCTGTGTTTGCTGATGTCGATCCTGAAACA---TACAATCTTGATC 337
BSNT_05798___ 344 CGGTAAAGCTTGAGGCGGCCGTCACACC-GCGAACGAAAGCAGTTGTGCC 392
||..|||..|.||.|......||||.|| || .||.|||||..|..|.||
BL03075___sps 338 CGAAAAAAATAGAAGAAAAGATCACCCCTGC-TACTAAAGCGATCATTCC 386
BSNT_05798___ 393 CGTCCA---CTTTGGCGGGCAGTCCTGC-GATATGGATGCAATATTGGCT 438
|||||| ||| |||.||| ||.|| ||||||||.|..||..|||..
BL03075___sps 387 CGTCCATATCTT---CGGACAG-CCGGCTGATATGGACGAGATCATGGAG 432
BSNT_05798___ 439 ATTGCCCAAAATCATGGTTTATTCGTGCTGGAGGATG------------- 475
.|||||.||||.||.||..|..|.|||.|.|||||||
BL03075___sps 433 CTTGCCAAAAAACACGGACTGCTTGTGATTGAGGATGCCTGCCAAGCGTT 482
BSNT_05798___ 476 CGGCACATGCGGTATATACGACTTATAAGCAAAGA-----ATGATCGGTT 520
||||.||| |.||| ||||| .|| ||||..
BL03075___sps 483 CGGCGCAT-------------CGTAT----AAAGAGCGGCCTG-TCGGCA 514
BSNT_05798___ 521 CTATCGGAGATGCAACGGC----ATTCAGCTTTTACGCCACCAAAAACCT 566
..|||||.||||| ||.| .|||| ||||.|.|.||.||||||.|
BL03075___sps 515 GCATCGGGGATGC--CGCCTGTTTTTCA--TTTTTCCCTACAAAAAACTT 560
BSNT_05798___ 567 CGCGACA---GGGGAAGGCGGCATGCTGACGACTGATGATGAGGAGCTTG 613
.|..||| ||.||.||.||.|||.||||||.|
BL03075___sps 561 GGGAACATTGGGAGACGGGGGAATGGTGACGATT---------------- 594
BSNT_05798___ 614 CCGATAAGATCCGGGTGCTAAGCCTTCACGGCATGAGTA--AAGCCGCAT 661
|.|||.||||.||| |||| ||||| |.|| ||..|.||
BL03075___sps 595 ----TCAGACCCGGATGC--AGCC----CGGCA--ATTAAGAACACTCA- 631
BSNT_05798___ 662 GGAACCGTTATTCTTCAAATGGCAGCTGG-------TACT---ATG---A 698
||||| .|||||| ||.| |||| ||| |
BL03075___sps 632 -GAACC-----------CATGGCA-CTAGCAAAAAATACTTCCATGACAA 668
BSNT_05798___ 699 AGTCG-----AATCGCCCGGCTATAAGATGAATATGTTTGATTTGCAGGC 743
|.||| || |..|||.|| ||| |||.||.||.||
BL03075___sps 669 AATCGGTTTCAA-CAGCCGTCT------TGA-------TGAATTACACGC 704
BSNT_05798___ 744 GGC------CCTCGGACTTCATCAGCTAAA----ACGGCTGGATGATATG 783
.|| .|||...||||.|.|| ||| ||||||||| |||
BL03075___sps 705 CGCAGCTTTACTCATTCTTCTTGAG--AAAATCGACGGCTGGA----ATG 748
BSNT_05798___ 784 CAGAAACGGAGAGAAGAGATTGCCGGCCGCTATCAAACCGCTTTTCAGCA 833
.|.||| || ||||||| |.|||.||||||| ||| |
BL03075___sps 749 AACAAA--GA-AGAAGAG-TGGCCAGCCGCTA-------------CAG-A 780
BSNT_05798___ 834 GATTCCGGGACTGATCACGCCGTTTGTCCATGA-----------TGACGG 872
|| .||..|||..|||.|| || ||.|||
BL03075___sps 781 GA----AGGTTTGAAAACGGCG---------GAGCACCTCACACTGCCGG 817
BSNT_05798___ 873 CAG------------GCACGC----CTGGCATCTATA-TGT-TCTGCAAG 904
||| ||||.| ||..|||||.|| ||| ||.||
BL03075___sps 818 CAGAGAAAGAGGACCGCACACATATCTATCATCTCTATTGTATCGGC--- 864
BSNT_05798___ 905 TTGATGAAAAAAAGGCCGGGGTTAC---------GCGCAGCGAAATGATT 945
|..||||| |||.|..||| .|||.| ||.||..
BL03075___sps 865 -----GCGAAAAA--CCGCGACTACATCATACAATCGCTG---AAAGAGC 904
BSNT_05798___ 946 ACGGCTTTAA---AGG-----ATAAATACAATATCGGCACTAGCGTTCAT 987
|.|.|.||.| ||| || ||||....|| ||.|||||
BL03075___sps 905 AGGACATTCATTCAGGTGTGTAT--------TATCCTTGCT-GCCTTCAT 945
BSNT_05798___ 988 ----------TTTATTC-------CAGTACACATTCATCCGTATTATCAA 1020
|.||||| |||||||.| ||
BL03075___sps 946 CTGCAATCGGTCTATTCTTCACTGCAGTACAAA---------------AA 980
BSNT_05798___ 1021 AAGCAATTTGGATATAAGGAAGCGGA---CTT-TCCGAATGCCATGAATT 1066
|.||.||||...||| |||.|| ||| |||||
BL03075___sps 981 AGGCGATTTTCCTAT-----AGCCGAGTCCTTGTCCGA------------ 1013
BSNT_05798___ 1067 ACTATAAACGAACCCTTTCTC----TCCCGCTCTATCCATCAATGTCT-G 1111
|||||||| || |.||| ||..|||..|.||| |
BL03075___sps 1014 ----------AACCCTTT-TCGCCATTCCG----ATGGATCCTTTTCTAG 1048
BSNT_05798___ 1112 ACGACGATGTAGATGATGTCATTGAAGCTGTGCGG--GATATCGTAAA-- 1157
.||.|||.|.|.|.|||...|||....|||.||.| ||.| |||
BL03075___sps 1049 CCGCCGAGGAACAAGATCAGATTATTTCTGCGCTGCTGAAA----AAAGG 1094
BSNT_05798___ 1158 ---AGGGG----CTGATTAA 1170
||||| .|||
BL03075___sps 1095 AGGAGGGGAAAAGTGA---- 1110
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