Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01279 and BL03062

See Amino acid alignment / Visit BSNT_01279 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:47
# Commandline: needle
#    -asequence dna-align/BSNT_01279___yflN.1.5803.seq
#    -bsequence dna-align/BL03062___yflN.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01279___yflN-BL03062___yflN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01279___yflN-BL03062___yflN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01279___yflN
# 2: BL03062___yflN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 868
# Identity:     546/868 (62.9%)
# Similarity:   546/868 (62.9%)
# Gaps:         146/868 (16.8%)
# Score: 1555.0
# 
#
#=======================================

BSNT_01279___      1 ATGAGTGATCCTTATATGCCGCTGACTTCAGTCAGAAGCGGAACGGGGT-     49
                     ||||||||||||||.|||||..||||.||.||.|..||     |||||| 
BL03062___yfl      1 ATGAGTGATCCTTACATGCCTTTGACATCCGTTAACAG-----CGGGGTC     45

BSNT_01279___     50 -TCGAAGCG---GCAAAAGGGGTGCACGGCCTGACTGTGCAAATTGCGAA     95
                      |.||.|.|   ||..||||.||....||..||||.||||||||.|..||
BL03062___yfl     46 CTGGAGGAGTATGCCGAAGGTGTATTTGGTTTGACGGTGCAAATCGTCAA     95

BSNT_01279___     96 TGTCTATTTTATTCAGCTGCCTTCTGAACCTCACTC------ATTTGTTT    139
                     |||.|||||||||        ||| ||.||..|.||      |...||||
BL03062___yfl     96 TGTGTATTTTATT--------TTC-GATCCCGATTCGCGGGAAGCCGTTT    136

BSNT_01279___    140 TAATTGATGCCGGCATGCCTCAA-TCAGC-CGGCA-TGATTGTCAATGAA    186
                     ||||.||||||||.||||| ||| ||.|| |  || |.|||.|.|..||.
BL03062___yfl    137 TAATCGATGCCGGTATGCC-CAAGTCCGCTC--CATTCATTTTAAGAGAG    183

BSNT_01279___    187 GCCAAACAAAGATTCGGTGAAGGGTTTCAGCTGAAGG----CGATTATCC    232
                     ||.|||.|..|.||.||.||   .||||.|||.||.|    ||.||    
BL03062___yfl    184 GCGAAAGAGCGGTTTGGCGA---TTTTCGGCTTAAAGGAATCGTTT----    226

BSNT_01279___    233 TCACACACGGGCACTTTGACCATATTGGGGCAATCGAAGAGATC--CTTG    280
                     |.||||||||.||.||.||||||.|.||.||..|.||| || ||  ||.|
BL03062___yfl    227 TGACACACGGACATTTCGACCATGTCGGCGCTTTGGAA-AG-TCTTCTCG    274

BSNT_01279___    281 -AGCATTGGGATGTGCCTGTTTATGTCCATTCTCGG-----GAAATGCCC    324
                      |.|| |||...||.||.|||||.|.||||     |     ||||||||.
BL03062___yfl    275 AAACA-TGGCCGGTTCCAGTTTACGCCCAT-----GAGAAAGAAATGCCT    318

BSNT_01279___    325 TATGTAACAGGTAAAGAAGATTATCCTCCGGCTCGTCCTG----ACAGCA    370
                     |||.|||..||.||||..||||||||         .||||    ||.|||
BL03062___yfl    319 TATTTAATGGGAAAAGCCGATTATCC---------GCCTGCAAAACCGCA    359

BSNT_01279___    371 AG-----AGCGGGCTGGTCGCCAAGCTGTCGCCGCTGTTTCCGCGGCACT    415
                     ||     |||||||||||.||.|||.||||.|||.|.||||||.||||||
BL03062___yfl    360 AGTGAAAAGCGGGCTGGTTGCAAAGATGTCTCCGTTATTTCCGAGGCACT    409

BSNT_01279___    416 CCATCGATATTTCCTCACATGTCCAGGCA-CTGCCGGAAGACGGTTCAGT    464
                     |||||.|.|||||.||.||||| .|.||| ||.....||||.|||||..|
BL03062___yfl    410 CCATCAACATTTCGTCCCATGT-AAAGCAGCTTAATAAAGATGGTTCGCT    458

BSNT_01279___    465 CCCTTTTCTTGACGAGTGGATGTGGATTGCGACACCAGGACACACGCCGG    514
                     .||.||||||||.|..||||..|||||||.|||.||.||.||.||.||||
BL03062___yfl    459 TCCGTTTCTTGAAGGATGGAAATGGATTGAGACGCCGGGCCATACACCGG    508

BSNT_01279___    515 GCTATATTTCGTTATTCCG-----CGATGACGG--CCGCGTGCTTG-TGG    556
                     |..||.|||||.|.|||||     ||  |||.|  |      |||| |.|
BL03062___yfl    509 GGCATGTTTCGCTTTTCCGGCAGTCG--GACAGAAC------CTTGATCG    550

BSNT_01279___    557 CAGGTGATGCTGTTATTACAGTGGAACAGGAG---------AAAATGGCT    597
                     ||||.||.||.||||..||.||.||.||||||         .||.|||| 
BL03062___yfl    551 CAGGGGACGCCGTTACAACTGTTGAGCAGGAGTCTCTATTTGAAGTGGC-    599

BSNT_01279___    598 GACGTCTTGATACAAAAACAGGAGCTTCACGGTCCGCCGGCTTATTTCAC    647
                             .||.|||||.||||||||..||||.|||||||||||||||||
BL03062___yfl    600 --------AATTCAAAAGCAGGAGCTGAACGGACCGCCGGCTTATTTCAC    641

BSNT_01279___    648 ----GCCT-GACACAGAGACGGCCGCTGAGTCCATTCTGAAGCTGGCCGG    692
                         |..| ||||     |..||.||.||.||..|||.|||||||||.||
BL03062___yfl    642 AATGGATTGGACA-----AAAGCAGCAGATTCGGTTCGGAAGCTGGCAGG    686

BSNT_01279___    693 TCTTGAACCGGAAGCGTTATTGACAGGGCACGGCATACCGATGACCGGCA    742
                     ..|..||||||..||.||||||||.||.|||||..|||||||||..||.|
BL03062___yfl    687 ATTAAAACCGGCTGCATTATTGACGGGACACGGTGTACCGATGAAAGGAA    736

BSNT_01279___    743 AAAACTTT--CGAAG-------TGACTTAACTGA---ATTGGCAAATCGG    780
                     ...|.|||  |||||       |||..||.|.||   .|||.|    || 
BL03062___yfl    737 GCGATTTTTCCGAAGCGCTCCTTGATCTATCAGACCGCTTGCC----CG-    781

BSNT_01279___    781 TTATCGTCT-ATTTGA--    795
                         |.||| |||.|.  
BL03062___yfl    782 ----CCTCTGATTCGTAA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01279 and BL03062

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
