Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01416 and BL03055

See Amino acid alignment / Visit BSNT_01416 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:56
# Commandline: needle
#    -asequence dna-align/BSNT_01416___yfhF.1.5803.seq
#    -bsequence dna-align/BL03055___yfhF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01416___yfhF-BL03055___yfhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01416___yfhF-BL03055___yfhF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01416___yfhF
# 2: BL03055___yfhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 963
# Identity:     632/963 (65.6%)
# Similarity:   632/963 (65.6%)
# Gaps:         114/963 (11.8%)
# Score: 1817.0
# 
#
#=======================================

BSNT_01416___      1 ATGAATATCGC-AATGACGGGCGGAACCGGTTTTCTCGGCCAG-CATCTG     48
                     |||||.||.|| |.||.|||| ||.||.||||||.|||| ||| |||.||
BL03055___yfh      1 ATGAAGATTGCGATTGCCGGG-GGGACAGGTTTTATCGG-CAGACATTTG     48

BSNT_01416___     49 ACAGGCGTTCTTACCCG-CCAGGGACACCATGTTTATATTTTATCAAGAA     97
                     |||..|| .||||.||| ||.||||||.||.||.|||||||||.||||||
BL03055___yfh     49 ACAAACG-CCTTAACCGCCCGGGGACATCACGTCTATATTTTAACAAGAA     97

BSNT_01416___     98 ACGCAAGG--GAAGCTGAACAAAAAAATATGACATATGTCCAATGGCTGT    145
                     |..|  ||  |||.|.|||||||||||.|...|.|..||.|..||||   
BL03055___yfh     98 AACC--GGCCGAAACCGAACAAAAAAACACTTCTTTCGTTCTCTGGC---    142

BSNT_01416___    146 CGGAA------GGAGCCGCACCGGAGCAGGAACTTCCTCATATTGATGTC    189
                        ||      ||.|||...||.||..|.||.||..|..||||.|||||.
BL03055___yfh    143 ---AAAAAAACGGCGCCCGTCCTGAAAAAGATCTGACCGATATCGATGTT    189

BSNT_01416___    190 TGGATAAACCTTGCGGGAAAATCGATTTTTGGCCGCTGGACGGAAAAAAC    239
                     |||||.||..|.||.|||||||||.||||.|||||.||||..||||||||
BL03055___yfh    190 TGGATCAATTTAGCCGGAAAATCGCTTTTCGGCCGTTGGAATGAAAAAAC    239

BSNT_01416___    240 GAAGCAGCACATTCTC-TCCAGCCGTATCAATGCGACGC---GTGAAGTG    285
                     ||||..|.|.| ||.| .|.|||||..||       |||   |||  |.|
BL03055___yfh    240 GAAGGCGGAGA-TCGCGACAAGCCGCCTC-------CGCTCTGTG--GAG    279

BSNT_01416___    286 CAG-CGGC-----TTATTCAGAAA-----CAGAAGGAGAAGCCGCAGACA    324
                     .|| ||||     |.||  |.|||     ||||   ||||||||.|.||.
BL03055___yfh    280 GAGTCGGCCCGCATCAT--ACAAAGTCTTCAGA---AGAAGCCGAACACC    324

BSNT_01416___    325 CTGATCCAAGCCAGTGCCGTGGGTATTTACGGCACAAGCCTTGAGAAAAC    374
                     ||.||.||.||.||.||.||.||.||||||||.||.||.|||||..|.||
BL03055___yfh    325 CTCATTCAGGCGAGCGCAGTCGGAATTTACGGAACCAGTCTTGAACAGAC    374

BSNT_01416___    375 CTTTACAGAGGATTCTGCAACGTCAGATGAGGATTTTCTCAGCCATACTG    424
                     .||.||.|||||.|||.||...||.|.||||||||||.|.|||...||  
BL03055___yfh    375 ATTCACGGAGGAATCTCCAGTTTCGGCTGAGGATTTTTTAAGCAGAAC--    422

BSNT_01416___    425 CACACC--TGTGGGAAAAGGAAG--GACAGCATATTGAGGCGATGGGCAT    470
                     .|||.|  ||||||||.|||.||  || |.|| ||.||.|||.|.|||||
BL03055___yfh    423 GACAGCTTTGTGGGAACAGGCAGCCGA-ACCA-ATCGAAGCGCTTGGCAT    470

BSNT_01416___    471 CAGGACGGTTT--ATGCGAGATTTGGCGTGATGCTTGGAGAAAA---AGG    515
                     |.|.||.||.|  ||||  |.||||||.|..||||||||.||.|   |||
BL03055___yfh    471 CCGCACCGTCTGGATGC--GTTTTGGCCTTGTGCTTGGAAAAGACGGAGG    518

BSNT_01416___    516 CGCTCTCCCGCTCATGATTCTCCCCTATAAGTTTCTGGCCGGCGGAACG-    564
                     |||.||||||...|||...|||||||||.|.||..|.||.||||| ||| 
BL03055___yfh    519 CGCGCTCCCGAAAATGGCGCTCCCCTATCAATTGTTTGCAGGCGG-ACGC    567

BSNT_01416___    565 ATCGGAACGGGAAGGCAGTGGCTGTCATGGATTCATGTCGAGGATG----    610
                     |||||..||||..||||.|||.||.|||||||||||.||||.||.|    
BL03055___yfh    568 ATCGGCTCGGGGCGGCAATGGGTGCCATGGATTCATATCGAAGACGCCGT    617

BSNT_01416___    611 CGGCCCAGATGATCCGATATGCGGTGGA--AAACGCCGGCATCTCAGGCC    658
                     ||||    |||||...||.||||.|.||  |.||||.|  ||.||.||||
BL03055___yfh    618 CGGC----ATGATTTTATCTGCGATTGAACAGACGCTG--ATGTCCGGCC    661

BSNT_01416___    659 CAATGAATGTCACCGCGCCCAATCCTGTGGACATGAAGCAATTCGGAAAA    708
                     |..|.||||||||.||.||.|||||.||..|.|||.|...||||||..||
BL03055___yfh    662 CCGTCAATGTCACGGCACCGAATCCCGTTCAGATGGATACATTCGGGCAA    711

BSNT_01416___    709 ACGATTGC-ACGGGTGAAGCACCGCCCGCACTGGCTCCCCGTCCCGGAAT    757
                     ||..|.|| |..|..||| .|.|||||.|||||||||||.||.||.||||
BL03055___yfh    712 ACCGTCGCGAAAGTAGAA-AAACGCCCACACTGGCTCCCGGTTCCCGAAT    760

BSNT_01416___    758 TCTTTTTATCAAAAGC--ATTGGGTGAAATGAGTCTTTTGATTGTGAAAG    805
                       ||...||.|||.||  |.|.||.||||||||..|..|..|..||||||
BL03055___yfh    761 --TTGCGATAAAAGGCGTACTTGGAGAAATGAGCATGCTCGTGCTGAAAG    808

BSNT_01416___    806 GACAGCGCGCTCTTCCGAAAAAAGCG----ATAACCTCTGGATTTCGTTT    851
                     |||||||||..||.||||||||||||    |.|||    ||.|.||.|||
BL03055___yfh    809 GACAGCGCGTCCTCCCGAAAAAAGCGCTTCAGAAC----GGCTATCATTT    854

BSNT_01416___    852 TACATATTCGGATCTTGAATTTGCACTCTCACAGC--TCATAGCGGACCG    899
                     ...||||.|.|||||.|||..|||.|| .||||.|  || |.||      
BL03055___yfh    855 CTTATATCCCGATCTGGAAGATGCCCT-GCACAACCTTC-TGGC------    896

BSNT_01416___    900 AAAGACTGTATAA    912
                              ||||
BL03055___yfh    897 ---------ATAA    900


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01416 and BL03055

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
