Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01361 and BL03018

See Amino acid alignment / Visit BSNT_01361 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:53
# Commandline: needle
#    -asequence dna-align/BSNT_01361___yfiA.1.5803.seq
#    -bsequence dna-align/BL03018___glvR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01361___yfiA-BL03018___glvR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01361___yfiA-BL03018___glvR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01361___yfiA
# 2: BL03018___glvR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 820
# Identity:     554/820 (67.6%)
# Similarity:   554/820 (67.6%)
# Gaps:         104/820 (12.7%)
# Score: 1796.0
# 
#
#=======================================

BSNT_01361___      1 ATGCAGCTCGAAGAACTGATCAATCAGCACTACAGCAAATTGAATGACAA     50
                     ||||||.|.||||||.|.||.||..||||.||.|..||||||||.||.||
BL03018___glv      1 ATGCAGTTGGAAGAATTAATGAACAAGCATTATAAAAAATTGAACGAAAA     50

BSNT_01361___     51 CGATTTTCATATTTTAAAATATATATTGAATCAT-AAGCACACATGCTAT     99
                     ||||||||||.||||.||||||||.|||||.||| ||| ||||.|||||.
BL03018___glv     51 CGATTTTCATGTTTTGAAATATATTTTGAACCATCAAG-ACACTTGCTAC     99

BSNT_01361___    100 CACCTTGGAATCGACGCGCTTGCCA--AAGCTTGCAGTGTATCGCGTTCC    147
                     .|.||.||.|||.|||...|.||.|  |||  ||||.||||||.||..|.
BL03018___glv    100 AAGCTGGGCATCAACGAATTAGCAAAGAAG--TGCAATGTATCCCGCACA    147

BSNT_01361___    148 TCAATTTTACGGCTTGCCCAAAAGCTCGGTTTCAGCGGTTACAGTGAATT    197
                     ||.||||||.|.|||.|.|||||.||.|.|||||||||.|||||.||.||
BL03018___glv    148 TCGATTTTAAGACTTTCTCAAAAACTGGATTTCAGCGGGTACAGCGAGTT    197

BSNT_01361___    198 TCGCGTCTTTTTAAAGTGGGA-----AGATCAGCCGGAAGAAG-GCGAGA    241
                     ..|.||.|||.|.||||||||     |||  |||.|||||||| |||.||
BL03018___glv    198 CAGGGTGTTTCTGAAGTGGGAGGCCGAGA--AGCGGGAAGAAGAGCGGGA    245

BSNT_01361___    242 GTAT--GAGTT--TTCAAAAGCTGCTTGA-TGATATTGAAGC--------    278
                     ..||  ..|||  ||..|||||..|.||| .|||||.|||||        
BL03018___glv    246 AGATTGCCGTTCCTTTGAAAGCCTCATGAGGGATATGGAAGCGAGCATGA    295

BSNT_01361___    279 -AAATTTGAAGTTCTTACGGA-----CAAAGGACATGACGGACATGTGCC    322
                      |.|||||||  ...||||||     .||||            |||||||
BL03018___glv    296 AATATTTGAA--AAATACGGATTTGCGAAAG------------ATGTGCC    331

BSNT_01361___    323 AGCTGATTGATGAAGCGGACCGCATTTTCGTCTACGGTTCTGGAAATGCG    372
                     ||||.|||||.|||||||||||.|||||.|||||.|||||.||.|..||.
BL03018___glv    332 AGCTCATTGACGAAGCGGACCGGATTTTTGTCTATGGTTCAGGCACGGCT    381

BSNT_01361___    373 CAAAAGATATGCGCCCGCGACCTGCAAAGAATGTTTATTCCGCGCCATCG    422
                     ||.|.||..|||||....||.|||||..||||||||.||.|.|..||.||
BL03018___glv    382 CAGACGACGTGCGCTTATGAGCTGCAGCGAATGTTTGTTTCTCAGCACCG    431

BSNT_01361___    423 CTATCTTATTT-----TGATTGAAGATACAAATGAATTTAATTTGATGCG    467
                          ||||||     ||||..||||| |||||..||||           
BL03018___glv    432 -----TTATTTGACGGTGATCAAAGAT-CAAATCGATTT-----------    464

BSNT_01361___    468 CGA------------TGATTTTAAAGTA--AACGATCTGTTTATCATCAT    503
                     |||            |||||||  ||.|  ..|||||||.|.||||||||
BL03018___glv    465 CGACCTCATGTTTCCTGATTTT--AGCACGGCCGATCTGATCATCATCAT    512

BSNT_01361___    504 TTCTCTTTCCGGAGAAACACCGGAGCTGATTCCTCAGGCA-AGAATGCTT    552
                     |||.||.||.||||||||.|||..|||||||||.|||||| ||   .|||
BL03018___glv    513 TTCGCTGTCAGGAGAAACCCCGTCGCTGATTCCGCAGGCACAG---TCTT    559

BSNT_01361___    553 --TCTGCAAAGGGTATTCCCTTTATTTCCATTACGAATTTAAAAAACAAT    600
                       ||.||.||.||.|||||.|||||.||..|.||||||||.|||||.|||
BL03018___glv    560 TGTCGGCTAAAGGCATTCCTTTTATCTCTTTGACGAATTTGAAAAATAAT    609

BSNT_01361___    601 GTCCTCGCCCAGCTGACTCCGCATAATCTTTATGCGACAAGCAAACCTGT    650
                     .|.|||||||||||.|||||..|.|||||.||||||.|.|||.|..|.||
BL03018___glv    610 CTGCTCGCCCAGCTCACTCCTTACAATCTCTATGCGCCGAGCCAGACGGT    659

BSNT_01361___    651 GAC-ATTAAGCGATAAAACGGAAATTGTCGCTTTTGCACCGTTTTTTCTC    699
                     ||| .||.|.|.| |||||.||..|...||||||||||||.|||||||||
BL03018___glv    660 GACGGTTTATCCA-AAAACAGAGCTGACCGCTTTTGCACCCTTTTTTCTC    708

BSNT_01361___    700 GTTGGCGAAGCATTGTTCCGC-GCATATGTTGATTACAAAGAGGCAGAAA    748
                     |||||.|||||..||||.||| || |||||.||.|      |.||.|||.
BL03018___glv    709 GTTGGGGAAGCGCTGTTTCGCAGC-TATGTCGACT------ATGCTGAAG    751

BSNT_01361___    749 AAAATGACAATGAGTAG---    765
                     ||||..|.|||.||.||   
BL03018___glv    752 AAAAGAAAAATCAGGAGTAA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01361 and BL03018

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
