Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01351 and BL03016
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_01351___acoR.1.5803.seq
# -bsequence dna-align/BL03016___acoR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01351___acoR-BL03016___acoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01351___acoR-BL03016___acoR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01351___acoR
# 2: BL03016___acoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2017
# Identity: 1197/2017 (59.3%)
# Similarity: 1197/2017 (59.3%)
# Gaps: 380/2017 (18.8%)
# Score: 3092.5
#
#
#=======================================
BSNT_01351___ 1 ATGAATTCGGTCCCAAACG-------ATTTGCAAACCTGGAAACGTTTTG 43
||||||.|| ||| ||||..|.||.||||||||.||||
BL03016___aco 1 ATGAATCCG-------ACGCCCTGCTATTTAAATACGTGGAAACGCTTTG 43
BSNT_01351___ 44 TGAAAGACGGTGTGCTTGACGAAGCCCGATT-AAGAAAACGGATTGCAGA 92
|..|.||.||..|.|||||..|.|||||.|| ||.||| |||
BL03016___aco 44 TTCAGGAAGGGCTTCTTGATCAGGCCCGCTTGAACAAA---------AGA 84
BSNT_01351___ 93 GTCATGGCAT--------CGCTGCAAAA----AAGCTGAGGTCAATCCTT 130
|||||||.|| |||||||||| || |.||||||||.|
BL03016___aco 85 GTCATGGAATCATGGTACCGCTGCAAAAATCGAA----ATGTCAATCCGT 130
BSNT_01351___ 131 ATTTAGAAAAAGGCCCG--AAGGTTTTACAGCAAACGGAGCTGGA----- 173
|||||||.|||||.|.| || |||||.| ||| |||
BL03016___aco 131 ATTTAGATAAAGGACAGTCAA--TTTTAAA--AAA-------GGATTTAT 169
BSNT_01351___ 174 TCAGCAGTCAAAA----AAACATTCATTCTTCTTGACG--ACCGCAAAGC 217
||..|..|||||| |||||.||.||.|||.| || |.|||...||
BL03016___aco 170 TCGACGCTCAAAAAAAGAAACACTCGTTATTCCT--CGATATCGCCCTGC 217
BSNT_01351___ 218 CTTACCTCGAAAAACTGCTGCC-TGCCATAAAAGAAATGGAAATGATGGC 266
||||.||..|.||..| |.||| ||...|||||||...||||||||||||
BL03016___aco 218 CTTATCTACACAATAT-CAGCCGTGAATTAAAAGAGTCGGAAATGATGGC 266
BSNT_01351___ 267 GCTGTTAATTGATTCAGACGGTGTTGT-----TTTGGCATTGGACGGCCA 311
|||..|.||.|||.|.||||| || ||..|| ||||.||||
BL03016___aco 267 GCTCCTGATCGATGCCGACGG----GTACGTATTAAGC-TTGGCCGGC-- 309
BSNT_01351___ 312 TTCCCGCG--CGCTCTATGAAGCCAAACGCATCAACTTTGTCGAAGGGGC 359
|.||.|.| ||||..|.||.||.|||...|||||.|||||||| ||||
BL03016___aco 310 TGCCGGAGGACGCTTGAAGAGGCGAAAAAAATCAATTTTGTCGA--GGGC 357
BSNT_01351___ 360 AT--GCTGGACGGAAACGGCTGTCGGAACAAATGCGATTGGCACGGCACT 407
.| |||||||||||||.|..|||||.||.||.||.||.||.||.|||||
BL03016___aco 358 GTGCGCTGGACGGAAACAGAAGTCGGCACGAACGCCATCGGAACCGCACT 407
BSNT_01351___ 408 CCACATTAGCGAGCCGGTTGCGATACAAGGATCAGAGCATTACTCCATTG 457
..|.||..||||..|.||..|.||.||.||..|.|||||||..||..|.|
BL03016___aco 408 TGAAATCGGCGAAGCTGTCACCATTCACGGGACCGAGCATTTTTCGGTCG 457
BSNT_01351___ 458 CTTCCCATCTTTGGAACTGTTCAGCCGCTCCGATTCACCATGAGGATGGC 507
|||||||.|.|||||.||||||.||.||.|||||||.|.||||.||.|||
BL03016___aco 458 CTTCCCACCATTGGAGCTGTTCTGCTGCACCGATTCGCGATGAAGACGGC 507
BSNT_01351___ 508 AGCCTTGCGGGTGTGATTGACATATCGTGTCCGGCG----GCAGGCGCTC 553
|.|.||..||||.|.||.||.||.||.||.|...|| |.||| |
BL03016___aco 508 ACCGTTATGGGTTTAATCGATATTTCCTGCCTCACGGATAGAAGG----C 553
BSNT_01351___ 554 ATCCTCATATGCTCGGTAT---TGCCACTGCGATCGCCTATG-CAGCTGA 599
||||...||||||.||.|| ||||||||| |||..|.| ||.| ||
BL03016___aco 554 ATCCCTTTATGCTTGGGATGGCTGCCACTGC---CGCACACGCCATC-GA 599
BSNT_01351___ 600 ACGGGAACT---CGCAGCTA--AAAGCCGTGAGAAA--GAGCTCGAGCTG 642
|||.||..| ||||..|| ||| |.||| .||| ||||||.
BL03016___aco 600 ACGCGAGATCAGCGCACATACGAAA------AAAAACGAAGC-CGAGCTC 642
BSNT_01351___ 643 ATCAGCC---GTTTTGGAGAGAGGGCT--GCATCCAGTGTGCCG---ATG 684
||||||| ||.|||.|.|.|..|.| |.||| .|||| ||.
BL03016___aco 643 ATCAGCCATTGTCTTGAAAAAATCGATTCGGATC-----AGCCGTTTATC 687
BSNT_01351___ 685 G--TGCTATGCAATACCAAGCAGCACATCATCAGT----GCGAGCATACC 728
| |||.|||.|| ||| |||..||| || |||||||.|||
BL03016___aco 688 GTCTGCAATGAAA----AAG----ACAAAATC-GTAGCCGCGAGCAGACC 728
BSNT_01351___ 729 GATTC--GAACCTCAAT---ACCGGATTGGCAGGGCCGGC----ACCTGT 769
|.|.| ||||.|...| ||.|||...|.|.||..|.| |.||||
BL03016___aco 729 GGTGCGGGAACGTTTTTCCGACTGGAGGAGAATGGATGTCAATGATCTGT 778
BSNT_01351___ 770 ATGAGC-------TGAAGGAACGGGGCTACTCAATCGAAAAAGCTGTCA- 811
|||||| ||..|| ||||| |.||||.|.||
BL03016___aco 779 ATGAGCGCGGGTTTGCCGG---GGGGC-----------ACAAGCAGACAA 814
BSNT_01351___ 812 ---------CCATA----GGAG----------ATGGCG---GCACTTGTT 835
|||.| |||| |.|.|| |||||.|.|
BL03016___aco 815 TTTTCTCCGCCAAAGACGGGAGGCCCCTCGGTAAGTCGATTGCACTGGCT 864
BSNT_01351___ 836 TTTATCTTTCGGAACAAAAGAAAAAGAAG-----------GTGTTTCGAT 874
....|.|..||.||.|||| .|| ||.|..||.|
BL03016___aco 865 GAAGTGTCCCGCAATAAAA-------CAGCTCCATCACTCGTATCCCGTT 907
BSNT_01351___ 875 TCA---AT--GGAGTG-ATCGGG--CAAAGCGGCCGAT--CGCAAGCGAT 914
||| || || ||| |.|.|| |||..|||.||.| .|||.|||.|
BL03016___aco 908 TCATCTATCCGG-GTGAAACAGGAACAAGCCGGGCGTTTCAGCAGGCGCT 956
BSNT_01351___ 915 GCTGATGAACCTTGAACGTGCAGC-TGCGG------CAGATGCAACGGTC 957
.| ||| ||.||..|| ||||| |.|||||.|..||.
BL03016___aco 957 TC------ACC----ACATGAGGCTTGCGGCTAAGACGGATGCGAATGTA 996
BSNT_01351___ 958 TGTTTGTCGGGCGAAACTGGTACGGGAAAGGAAGTCGCGGCTCGCGCGCT 1007
|...|.|.|||.|||||.||..|.|||||||||.|.||.||..|.||..|
BL03016___aco 997 TACATATGGGGGGAAACAGGCTCCGGAAAGGAACTTGCCGCGAGGGCCAT 1046
BSNT_01351___ 1008 TCAT-----GAGAACAGTGAGAGACGGCACGGTCCGTTTATTGCTGTCAA 1052
|||| |||..||..||||.||||| ||.|||||.||.|||||
BL03016___aco 1047 TCATCAGGCGAGCGCACGGAGAAACGGC-----CCTTTTATCGCCGTCAA 1091
BSNT_01351___ 1053 TTGCGGAGCGATTCCGTCTGA---TTTGATTGAAAGCGAACTATTCGGAT 1099
.|||||.||.|||| |||| .|||||.||.||||||.|.|||||.|
BL03016___aco 1092 CTGCGGCGCCATTC---CTGAAAGCTTGATGGAGAGCGAATTGTTCGGCT 1138
BSNT_01351___ 1100 ATGCAGAGGGCGCTTTTACGGGAGCGAAACG----------AAATGGCTA 1139
||||.||.|||||.|||||.|||||.||.|| |||.||
BL03016___aco 1139 ATGCCGAAGGCGCATTTACAGGAGCAAAGCGCCGCGGTTCAAAAGGG--- 1185
BSNT_01351___ 1140 TAAAGGCGCCTTTCAAAAAGCGAATCAAGGCAC-ATTATTTTTAGATGAA 1188
||| |||.||.|.||..|.|..||.|| ||| |||.|.||||||
BL03016___aco 1186 --AAG-----TTTGAACAGGCTCACCGCGGTACGATT-TTTCTCGATGAA 1227
BSNT_01351___ 1189 ATCGGAGAAAT---TTCCCACTCGATGCAGGTTGCGCTTTTACGGGTGCT 1235
|||||.||.|| ||..|| ||||||.||.|||||.|||.||.| |.
BL03016___aco 1228 ATCGGTGAGATCCCTTATCA---GATGCAAGTGGCGCTCTTAAGGAT-CA 1273
BSNT_01351___ 1236 TC-AGGAACGCAAGATAACGCCAATCGGCGGGACGAAAGAAATTCCGGTT 1284
|| |.||.||.|||.|.||.||.||||||||.||....|||.||||..|.
BL03016___aco 1274 TCGAAGAGCGGAAGGTCACTCCGATCGGCGGAACCCGTGAAGTTCCCCTC 1323
BSNT_01351___ 1285 GATATCAGAGTTATTGCCGCCACACATTGTGATTTACGCGAGCTTGCCGA 1334
||.||||||.|.||..|.||.|||||..|||||.|....||.|||..|.|
BL03016___aco 1324 GACATCAGAATCATCACAGCAACACACCGTGATCTGAAAGACCTTCTCCA 1373
BSNT_01351___ 1335 AAACGGAAAAATCAGAGAGGACTTGTTTTACCGTCTTCATGTCTATCCAA 1384
|||.|||||.||..|.||.||..|||.||||||.||||||||.||.||..
BL03016___aco 1374 AAAAGGAAAGATACGTGAAGATCTGTATTACCGCCTTCATGTTTACCCCG 1423
BSNT_01351___ 1385 TTGAACTCCCTCCATTACGCGATCGCACCGAGGATATCCCGGACCTCTTT 1434
|..||.|.||.||..|..|.||.||||..|||||.||.||.|| |||
BL03016___aco 1424 TAAAAATACCGCCGCTCAGAGAGCGCAAAGAGGACATACCTGA----TTT 1469
BSNT_01351___ 1435 G----AGCACTACAAACAGAAGAATCATTGGCCAGG-CGAACTTCCTTCT 1479
| ..|||||..||||..|..|..|.||| .||| |||..||||..|.
BL03016___aco 1470 GTTCCGCCACTATCAACAACAACACGAGTGG-AAGGCCGAGTTTCCGCCG 1518
BSNT_01351___ 1480 GATTTTTGTAATGTGCTGAAGCAATGGAAGTGGCCGGGGAATATCCGTGA 1529
.||||||..||...|||..||.|||...|.|||||.||.||.||||||||
BL03016___aco 1519 AATTTTTTCAAGCGGCTTCAGGAATATCATTGGCCTGGTAACATCCGTGA 1568
BSNT_01351___ 1530 GCTGTTTAATGTGTTTGAACGTCTTTCTATCAG------ATTTCCGGACG 1573
|||.||||||...||||||.|.| |||| |||||||||.|
BL03016___aco 1569 GCTCTTTAATACATTTGAAAGGC------TCAGGGTTTTATTTCCGGAAG 1612
BSNT_01351___ 1574 GCCGGCTGAGGGATGAACCGCTACC-------CGCTTTACTGGAAGCCG- 1615
||.|.||||..||| ||| |.|| |||..|.||||| ||
BL03016___aco 1613 GCGGACTGATCGAT---CCG-TCCCAATACAGCGCGGTGCTGGA---CGG 1655
BSNT_01351___ 1616 -CTGGATTG-----CCGGC-CAGC-TCTGCAGAAAAAAAGCCGGCTGCTG 1657
||.||||| .|||| ||.| ||||.||||.|
BL03016___aco 1656 ACTCGATTGGAACAGCGGCGCACCTTCTGAAGAAGA-------------- 1691
BSNT_01351___ 1658 CCGGCGTGCTTACCTTTCGTGAGCAAATCCAAAAGGATATGATGATCAAA 1707
||| |||.||.||..|.||.|...|.|||||..|.|.||||||..||
BL03016___aco 1692 CCG----GCTCACATTCAGAGAACGTGTTCAAAAACAAACGATGATGGAA 1737
BSNT_01351___ 1708 GCGCTTG-AATCAGCAAAAGGAAACGTCTCTCAAGCCGCAAAAATCAGCG 1756
|| .||| ||..|.|.||||||||.||.||..||||.||.||..|...||
BL03016___aco 1738 GC-TTTGCAAAAAACGAAAGGAAATGTGTCCGAAGCGGCCAAGCTGGCCG 1786
BSNT_01351___ 1757 GGATCCCCCGAAGCACTTTCTACAAACGCCT--GAAAAAATTCAAC---T 1801
|.||.||..|||||||.||.|||||.||.|| |||||.|| ||| |
BL03016___aco 1787 GAATTCCAAGAAGCACATTTTACAAGCGGCTTCGAAAATAT--AACCTTT 1834
BSNT_01351___ 1802 TGTCCGCTGAATCATAA 1818
.|
BL03016___aco 1835 AG--------------- 1836
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