Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01344 and BL03012
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:52
# Commandline: needle
# -asequence dna-align/BSNT_01344___acoA.1.5803.seq
# -bsequence dna-align/BL03012___acoA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01344___acoA-BL03012___acoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01344___acoA-BL03012___acoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01344___acoA
# 2: BL03012___acoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1035
# Identity: 707/1035 (68.3%)
# Similarity: 707/1035 (68.3%)
# Gaps: 93/1035 ( 9.0%)
# Score: 2423.0
#
#
#=======================================
BSNT_01344___ 1 ATGAAATTGTTAAAACGAGAAGGCTTGTCATTAACTG----AGGAAAAAG 46
||| ||..|||| |||| |||||||||
BL03012___aco 1 ATG-------------GAAGAGGC---------ACTGACAAAGGAAAAAG 28
BSNT_01344___ 47 CGCTGTGGATGTACCAAAAGATGCTGGAGATCAGGGGCTTTGAAGACAAA 96
|..||||||||||.|||||.||||||||.|||.|....||.|||||..|.
BL03012___aco 29 CAGTGTGGATGTATCAAAAAATGCTGGAAATCCGCTATTTCGAAGATCAG 78
BSNT_01344___ 97 GTGCATGAACTGTTCGCCCAGGGAGTGCTTCCCGGATTCGTTCATTTATA 146
||.|||.|.|||||.||..|.|||.|.||.||.||.||.||.|||.|.||
BL03012___aco 79 GTTCATCAGCTGTTTGCTAAAGGAATACTGCCGGGTTTTGTCCATCTTTA 128
BSNT_01344___ 147 TGCCGGTGAGGAAGCCGTGGCTGTAGGGGTGTGCGCTCATTTACATGATG 196
.|||||.||.|||||.||.||||..||.||.|||||||||.|..||||||
BL03012___aco 129 CGCCGGAGAAGAAGCGGTCGCTGCGGGCGTCTGCGCTCATCTGAATGATG 178
BSNT_01344___ 197 GCGACAGCATTACAAGCACCCACAGGGGACATGGACATTGTATCGCCAAA 246
..||||.|||.||.|||||.||..|.||.|||||.||.||.||.||.|||
BL03012___aco 179 AAGACACCATCACGAGCACACATCGCGGCCATGGGCACTGCATTGCAAAA 228
BSNT_01344___ 247 GGCTGTGATTTGGACGGCATGATGGCGGAAATTTTCGGGAAAGCGACCGG 296
||.||.||.|||.|.|||||||||||.||.||.|.|||.|||.|..|.||
BL03012___aco 229 GGGTGCGACTTGAAAGGCATGATGGCCGAGATATACGGAAAATCTGCAGG 278
BSNT_01344___ 297 ATTGTGCAAAGGCAAGGGCGGTTCTATGCACATTGCGGATCTTGATAAAG 346
|.|.||.|||||.||.|||||.||.|||||.|||||.||..||||.||||
BL03012___aco 279 ACTTTGTAAAGGAAAAGGCGGATCGATGCATATTGCAGACTTTGACAAAG 328
BSNT_01344___ 347 GCATGTTAGGCGCAAATGGAATCGTCGGGGGCGGCTTTACGCTCGCATGC 396
|.|||.||||||||||.|||||||||||.||.||.|||.|..|.||.|||
BL03012___aco 329 GGATGCTAGGCGCAAACGGAATCGTCGGCGGGGGATTTCCTTTGGCCTGC 378
BSNT_01344___ 397 GGATCAGCGCTCACGGCTAAATATAAACAGACTAAAAATGTAAGCGTTTG 446
|||.||||.|||||.||.||.||||||.||||||||||||||||||||||
BL03012___aco 379 GGAGCAGCTCTCACTGCAAAGTATAAAAAGACTAAAAATGTAAGCGTTTG 428
BSNT_01344___ 447 CTTTTTCGGGGACGGGGCAAATAACCAAGGCACCTTCCACGAAGGGCTGA 496
||||||.||.|||||.||.||.|||||.||.||.||.|||||||||.|.|
BL03012___aco 429 CTTTTTTGGCGACGGCGCCAACAACCAGGGGACATTTCACGAAGGGATCA 478
BSNT_01344___ 497 ATTTAGCGGCTGTATGGAACCTTCCTGTCGTGTTTGTTGCTGAAAACAAC 546
|..|.||.||..|.|||||.||.||||||.|.|||||.||.|||||||||
BL03012___aco 479 ACCTTGCCGCCATCTGGAAGCTCCCTGTCATATTTGTCGCCGAAAACAAC 528
BSNT_01344___ 547 GGCTATGGCGAAGCTACCCCATTTGAGTACGCATCAGCCTGTGATTCAAT 596
||.|||||||||||.||.||.|||...||.||.|||..|||.||.||.||
BL03012___aco 529 GGGTATGGCGAAGCGACTCCGTTTTCCTATGCGTCAAGCTGCGAGTCGAT 578
BSNT_01344___ 597 CGCCGATCGGGCAGCTGCTTATAACATGCCGGGGGTTACAGTTGACGGCA 646
|||.|||||.||.||.||||||...||.|||||.|||...|||||.||.|
BL03012___aco 579 CGCAGATCGTGCGGCCGCTTATGGGATTCCGGGCGTTCGCGTTGATGGAA 628
BSNT_01344___ 647 AAGATATTTTAGCAGTTTACCAGGCAGCCG--AGGAAGCGATAGAAAGAG 694
|||||......||.||.|.||||||.||.| .|| ||||||||..|.|
BL03012___aco 629 AAGATGCGGCCGCGGTCTTCCAGGCTGCGGGCCGG--GCGATAGAGCGTG 676
BSNT_01344___ 695 CAAGAAACGGCGGCGGCCCGTCTTTGATTGAATGTATGACCTACAGAAAC 744
|.|.||||||.|..||.|||.|..|.|||||.||||||||.|||.|.|||
BL03012___aco 677 CCAAAAACGGAGAAGGACCGACGCTCATTGAGTGTATGACATACCGGAAC 726
BSNT_01344___ 745 TACGGCCATTTCGAAGGAGATGCCCAAACCTATAAAACGAAGGATGAAAG 794
|||||||||||.||||||||||||||...|||.|||||.||.||.||||.
BL03012___aco 727 TACGGCCATTTTGAAGGAGATGCCCAGCGCTACAAAACAAATGAAGAAAA 776
BSNT_01344___ 795 AGTTGAGCACCTTGAAGAAAAAGATGCCATTCAAGGTTTTAAAAACTACC 844
||..|.|||.|..||||||||||||||||||...|..||.||||.|.|.|
BL03012___aco 777 AGCGGTGCATCAGGAAGAAAAAGATGCCATTGCCGTGTTCAAAAGCGAAC 826
BSNT_01344___ 845 TTTT---AAAAGAAACAGATGCTAATAAGCTGTCAGACATTGAACAGCGT 891
|..| ||||| .|||.||.|| || ..|||.||| .
BL03012___aco 827 TGCTGGCAAAAG-------GGCTGATGAG-TG-------AAGAAGAGC-A 860
BSNT_01344___ 892 GTCAGCGAATCGATTGAAAAAGCCGTT----------------------T 919
||| ||| |||||||||||..||| |
BL03012___aco 861 GTC-GCG----GATTGAAAAAGAAGTTGAAGAAGCGGTCGAGGAAGCGGT 905
BSNT_01344___ 920 CG--TTCAGCGAAGACAGTCCATATCCAAAAGATTCGGAGCTGCTGACAG 967
|| |||||||||.|.||..|.|||||..||||..|.||.||||||||.|
BL03012___aco 906 CGCATTCAGCGAAAAAAGCGCTTATCCGGAAGAAACCGAACTGCTGACGG 955
BSNT_01344___ 968 ATGTGTACGTGTCATATGAAAAAGGAGGAATGTAA 1002
||||.||.||.||.|||.||
BL03012___aco 956 ATGTATATGTATCCTATTAA--------------- 975
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