Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04996 and BL03006
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:11
# Commandline: needle
# -asequence dna-align/BSNT_04996___bdbD.1.5803.seq
# -bsequence dna-align/BL03006___bdbD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04996___bdbD-BL03006___bdbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04996___bdbD-BL03006___bdbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04996___bdbD
# 2: BL03006___bdbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 743
# Identity: 447/743 (60.2%)
# Similarity: 447/743 (60.2%)
# Gaps: 121/743 (16.3%)
# Score: 1164.0
#
#
#=======================================
BSNT_04996___ 1 GTGAAAAAGAAACAGCAGTCTTCTGCGAAATTCGCGGTCATCCTTACGGT 50
|||||.||||||||||||||..|...||||||.||.||.||..|.||.||
BL03006___bdb 1 GTGAAGAAGAAACAGCAGTCACCGATGAAATTTGCAGTGATTATGACAGT 50
BSNT_04996___ 51 TGTGGTTGTTGTATTGCTAGCAGCCATTGTCATCATTAATAA-CAAAACG 99
.|||||.|||.|..||.|.|..||..|||||.|.||.||.|| ||||.|
BL03006___bdb 51 CGTGGTCGTTTTTCTGATCGGCGCACTTGTCGTAATCAACAATCAAACC- 99
BSNT_04996___ 100 GAACAAGGTAATGATGC----------GGTGTCCGGGCAGCCGTCTATCA 139
||| ||||.|.| |.||.| .||||.||.|...
BL03006___bdb 100 ---CAA---AATGCTTCGCAAACCTTTGATGAC----AAGCCTTCAACTG 139
BSNT_04996___ 140 AAGGGCAGCCTGTGCTTGGCAAGGACGATGCACCGGTAACTGTAGTAGAA 189
||||.|||||..|.||.|||||..|.|||||..|.|||||..|....|||
BL03006___bdb 140 AAGGACAGCCGCTTCTAGGCAACAAAGATGCGGCTGTAACGATCACGGAA 189
BSNT_04996___ 190 TTCGGAGATTACAAATGTCCGTCTTGCAAGGTGTTTAACAGTG------- 232
||||||||||||||||||||....|||| |||||||
BL03006___bdb 190 TTCGGAGATTACAAATGTCCCAGCTGCA--------AACAGTGGACTGAG 231
BSNT_04996___ 233 -ACATCTTTCCAAAAATACAAAAAGACTTTATTGATAAGGGCGATGTGAA 281
.|.|||||||..|..|..||||.||.|..||.|||||.|...|.||.||
BL03006___bdb 232 ACCGTCTTTCCGGATTTGAAAAAGGATTACATCGATAAAGATCAAGTTAA 281
BSNT_04996___ 282 ATTTTCTTTCGTGAACGTC----ATGTTC--CATGGAAAAGGTTC--AAG 323
.|||||.|...|.|||.|| |||..| ||.||.|.|||.|| ||
BL03006___bdb 282 TTTTTCATATATTAACTTCGTCAATGAACAGCACGGCAGAGGCTCTGAA- 330
BSNT_04996___ 324 GTT-AGCGGCTCTTGCATCTGAAGAAGTATGGAAGGAAGACCCTGACTCT 372
|| ||| ||.||.||.||.||..|.||||||||||||||.||.||.||.
BL03006___bdb 331 -TTGAGC-GCCCTCGCTTCCGAGCAGGTATGGAAGGAAGATCCGGATTCA 378
BSNT_04996___ 373 TTTTGGGATTTCCATGAAAAGCTGTTCGAAAAA----CAGCCGGA----- 413
||.|||.|.||||||||...|.||| |.|| |||||.||
BL03006___bdb 379 TTCTGGAAGTTCCATGAGGCGTTGT----ACAAGGCGCAGCCTGACAATG 424
BSNT_04996___ 414 ----TACGGAACAGGAATGGGTAACCCCAGGCCTCCTTGGTG---ATCTT 456
.|.||||.|.||.||||..||.|| |||....||||.| |||..
BL03006___bdb 425 ACACGATGGAAAACGAGTGGGCGACGCC-GGCAAAATTGGCGGACATCAC 473
BSNT_04996___ 457 GCAAAAAG-CACCACAAAGATAAAACCTGAGACGC---TCAAGGA----A 498
| .||| ||..||.||.||.||||..||.|.|| || ||.| |
BL03006___bdb 474 G---GAAGCCAATACGAAAATCAAACGCGATAAGCTTGTC-AGCAGCTTA 519
BSNT_04996___ 499 AATCTTGATAAGGAAACATTCGCTTCTCAAGTGGAAAAGG---ATTCTGA 545
|| |||.| ||||.||||||...|||.|..|||.|| |||
BL03006___bdb 520 AA---TGACA---AAACGTTCGCTGAGCAATTAAAAACGGACAATT---- 559
BSNT_04996___ 546 CCTTAATCAAAAAATGAAC---ATACAGGCAACACCGACGATTTACGTCA 592
|..|.|||||.|||| || .||.|..|.||.||||||||.|..||||
BL03006___bdb 560 CGCTCATCAACAAAT--ACGGTGTAGACTCGACGCCGACGATCTTTGTCA 607
BSNT_04996___ 593 ATG----ATAAAGTGATCAAAAATTTTGCGGATTATGATGAAATCAAAGA 638
|.| |.|||..|| ||||...||| ||||||||..||||||||||
BL03006___bdb 608 ACGGCGTAAAAATCGA-CAAACCGTTT---GATTATGACAAAATCAAAGA 653
BSNT_04996___ 639 GACAATAGAAAAAGAGCTGAAAGGGAAGT------AA------ 669
.||.||.||.||||||||||||||..||| ||
BL03006___bdb 654 AACGATCGAGAAAGAGCTGAAAGGCCAGTCTGATGAAAAATAA 696
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