Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02496 and BL03002
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_02496___ylbM.1.5803.seq
# -bsequence dna-align/BL03002___ylbM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02496___ylbM-BL03002___ylbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02496___ylbM-BL03002___ylbM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02496___ylbM
# 2: BL03002___ylbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1389
# Identity: 827/1389 (59.5%)
# Similarity: 827/1389 (59.5%)
# Gaps: 279/1389 (20.1%)
# Score: 2240.5
#
#
#=======================================
BSNT_02496___ 1 ATGAAAGCTGTCGGATTGGTGGTTGAATATAATCCCTTTCATAACGGTCA 50
||||||||.|||||..|.||.||.|||||.|||||.|||||||||||.||
BL03002___ylb 1 ATGAAAGCGGTCGGCCTTGTTGTGGAATACAATCCTTTTCATAACGGACA 50
BSNT_02496___ 51 CCTTTATCAT---------GCCCAAACAGCAAAGCGGCAAACCGGATGTG 91
..|.|||||| ||..||.|||.||.|||| |.| ||.||
BL03002___ylb 51 TTTATATCATATAAAGGAAGCAAAATCAGAAACGCGG---AGC-GAGGT- 95
BSNT_02496___ 92 ACACGGCTGTCGCGGTCATGAGCGGGCATTTTTTACAGCGTGGGGAACCG 141
|||.||.||.||.||||||||....|||||.|||||.||.|||||.
BL03002___ylb 96 ----GGCGGTTGCCGTTATGAGCGGCTCCTTTTTGCAGCGCGGCGAACCC 141
BSNT_02496___ 142 GCTGTTGTGTCAAAATGGGCCCGAACAAAAATGGCGCTGCAAAGCGGA-- 189
||..|.||.|||||.|||||.||.||.||.|||||||| ||.|
BL03002___ylb 142 GCCATCGTATCAAAGTGGGCGCGTACGAAGATGGCGCT------CGCATC 185
BSNT_02496___ 190 ----GTTGATCTTGTTATTGAGCTGCCTTATCTTTATGCCGTGCAAAAAG 235
|..|||.|.||..||||.||.|||||..|.|..|||||.|||||||
BL03002___ylb 186 TTTTGCCGATGTCGTCGTTGAACTCCCTTACATATTCGCCGTCCAAAAAG 235
BSNT_02496___ 236 CAGACATTTTTGC---ACGCGGCAGTGTTTCCATCCTGAACGAACTTGAA 282
|.||.|..||||| |.|||.| ||.||.||..|.|| ||||
BL03002___ylb 236 CGGAAACGTTTGCTGAAGGCGCC---GTCTCGATTTTAAA------TGAA 276
BSNT_02496___ 283 TGTAAGG-------CGCTGTTTTTCGGGAGTGAAAATGGGGATATCAAGC 325
| ||.|| |..||||||||||.||.||..|.||.|||||..||.
BL03002___ylb 277 T-TAGGGTGTTCTTCTTTGTTTTTCGGAAGCGAGCACGGCGATATTGAGG 325
BSNT_02496___ 326 CGTTTTTAGAAACAG-----CACAGCTTATTGGTGAGCATAAACATACAT 370
|.|||.|..|.|||| ||||...|| |||||
BL03002___ylb 326 CATTTCTCAATACAGCCGCACACACGATA-----GAGCA----------- 359
BSNT_02496___ 371 TTGATGACCGAATTAAAGAAGAACTTAAAACG------------GGGACG 408
.||.|||.|..|.||.||||||...|.||.| |||..|
BL03002___ylb 360 -CGAAGACAGGCTCAACGAAGAAGCCAGAAAGCAGATAGCGTTTGGGCTG 408
BSNT_02496___ 409 AGTTACCCAGC-AGCGGCGGCTAGCGCCTTCAGCTCCATTTTGCATACCG 457
||.||||| || ||||..|||.|..||.|||.|.|| || ||.|.
BL03002___ylb 409 AGCTACCC-GCAAGCGATGGCAAAAGCGTTCCGGTC-----TG--TAACA 450
BSNT_02496___ 458 A---AAGTGC----AC----TTGACTTGTCAAAACCAAATAACATTTTGG 496
| ||| || || |||||.|.|||||.||.||.||||||.|.|
BL03002___ylb 451 AGAGAAG-GCGGTAACATCGTTGACCTTTCAAAGCCGAACAACATTCTCG 499
BSNT_02496___ 497 GGTACCAGTATGTGA----CTTCGGTTC---------TAACCGGGGGATA 533
|.|.|||.||||||| |.|| .|.| |||.|
BL03002___ylb 500 GATTCCATTATGTGAAAGCCATC-ATGCAAAAGCAATTAAGC-------- 540
BSNT_02496___ 534 CCCTATGAAACCTTATACCACGGCA--CGCATCTCTTCGGACTATCATGA 581
|||||.||..|.|| ||.|| |||...||.||.|.||||||.||
BL03002___ylb 541 ----ATGAAGCCCGAAAC--CGTCAAGCGCCGGTCCTCAGGCTATCACGA 584
BSNT_02496___ 582 TGCCGATC--TCCCTGAAGGCGAAAACCACATTGCAAGCGCCACAAGCAT 629
|.| |.| |||||||||..| |||..||.||||||||.||.|||||
BL03002___ylb 585 TTC--AACATTCCCTGAAGCGG---ACCGAATCGCAAGCGCTACGAGCAT 629
BSNT_02496___ 630 CAGAAAAGCGATGACTGGCCAGAATCTCGAAGCCT--------GCCTTCG 671
..|.||..||||...| |||.|..||||||| |||
BL03002___ylb 630 ACGCAAGTCGATTTTT-----GAAACGGGAAGCCTTGCGGACAGCC---- 670
BSNT_02496___ 672 TTTTCTCCCT------------GCTGCATCTGCACG-TGAATTAGCAGCT 708
..||||.||| |.|..||..||.|| |||||..||
BL03002___ylb 671 GCTTCTACCTTCCAAAGACAACGGTCGATGAGCTCGATGAATACGC---- 716
BSNT_02496___ 709 TACCGCAAATCTTTCGGATTGTGGCATACACCTGAGAGCTACTTTTC--- 755
|||.| |||||||..|||||||..|.||||| ||.|..|||.|
BL03002___ylb 717 --CCGGA---CTTTCGGCATGTGGCACTCGCCTGA-AGATTATTTCCCCT 760
BSNT_02496___ 756 TTACTTAAAATACAGCCT---TTCAACTGTA-ACGGCACAGGAATTACAG 801
|| ||.||||||||||| |.||| ||.| ||.|.|.|| |.|
BL03002___ylb 761 TT--TTGAAATACAGCCTGCATACAA-TGGATACAGAAGAG------CTG 801
BSNT_02496___ 802 CAAG---TATACGAGGTGGAGGAAGGTTTAGAGCACAGAATTCTTCGT-- 846
.||| |||||||.|||||.|||||..|.||||||.| |||
BL03002___ylb 802 AAAGGGATATACGAAGTGGAAGAAGGCCTTGAGCACCG-------CGTCA 844
BSNT_02496___ 847 -----TCGATCAGAAAATCCAGCTCCTATCAGGAATTTATGGAGCTGCTG 891
.|||||.|.|||.|..||||.|.|.||||||..||||||||..||
BL03002___ylb 845 AAAAAGCGATCCGGAAAGCAGGCTCTTTTAAGGAATACATGGAGCTTTTG 894
BSNT_02496___ 892 AAAACAAAACGCTATACGTGGACAAGGCTCCAGCGGATGAATACACACAT 941
|||||.||.|||||||||||||||||.||.|||||.|||||.||.||.||
BL03002___ylb 895 AAAACGAAGCGCTATACGTGGACAAGACTGCAGCGCATGAACACCCATAT 944
BSNT_02496___ 942 TTTAACCAGAACAAAAAAACAGGATATGCAAAAGCTGCTTG--ACAACGA 989
..|.||.|.|||.||.|||...||..| .|||| ||.|| | |||||
BL03002___ylb 945 CCTCACAAAAACGAAGAAAGCCGACGT---TAAGC-GCATGTTA-AACGA 989
BSNT_02496___ 990 TA---AGGCGCCGTATATCAGGCTTCTCGGCATGACAAAAAAAGGACAGG 1036
.| |..||.|.||||||||.||||||||.||||||||||||||.||||
BL03002___ylb 990 AACACATCCGGCATATATCAGACTTCTCGGAATGACAAAAAAAGGGCAGG 1039
BSNT_02496___ 1037 CTTATTTATCCGAAAAGAAAAAA---------GCACTGTCTGTTCCGCTT 1077
|.|||||..|.|||||||||||| ||| ||.|||
BL03002___ylb 1040 CCTATTTGGCTGAAAAGAAAAAAAGCTTGAGCGCA---------CCCCTT 1080
BSNT_02496___ 1078 GTCAGCAAACTGTC---CTCTTTCTCCCATCCAGCTCTCGATCTGGACGT 1124
.|.| |||| |.| .||.||.||||||||..|.|||.|.||.|||.|
BL03002___ylb 1081 ATTA-CAAA--GACGGGATCGTTTTCCCATCCTTCCCTCCAGCTTGACAT 1127
BSNT_02496___ 1125 AAAAGCAAGC--AGGATTTACAGCCTGCCGATAGAAGAGCCGCTGAGAAC 1172
||||||..|| || |.||||||...|||.|..||||||||.||.|.||
BL03002___ylb 1128 AAAAGCGGGCCAAG--TATACAGCGCCCCGCTCAAAGAGCCGGTGCGGAC 1175
BSNT_02496___ 1173 TGAGTTTGAC-CTGCAGGAATACGGACATGCACCGATTCGATATGATGAA 1221
||...|||| ..|||||||||....|.|.|.|||||..|.|||||.|||
BL03002___ylb 1176 -GATGCTGACAGAGCAGGAATATTCCCTTTCGCCGATCAGGTATGACGAA 1224
BSNT_02496___ 1222 GATGAACA-----ACACTTTT-------TAAATGTATAG 1248
| ||| |.|.|||| |||
BL03002___ylb 1225 G----ACAGCCGGATATTTTTGCGCAAATAA-------- 1251
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