Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02462 and BL02997
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:01
# Commandline: needle
# -asequence dna-align/BSNT_02462___ylaJ.1.5803.seq
# -bsequence dna-align/BL02997___ylaJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02462___ylaJ-BL02997___ylaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02462___ylaJ-BL02997___ylaJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02462___ylaJ
# 2: BL02997___ylaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 681
# Identity: 431/681 (63.3%)
# Similarity: 431/681 (63.3%)
# Gaps: 117/681 (17.2%)
# Score: 1234.0
#
#
#=======================================
BSNT_02462___ 1 GTGCGAATTCTTTTCATT-ATCGTACAGCTGACACTTATCCTG---TCCG 46
||||||| ||||||..|| |||.||...|..||..||||.||| ||.|
BL02997___yla 1 GTGCGAA-TCTTTTTTTTGATCCTAATTCAAACCGTTATGCTGCTTTCAG 49
BSNT_02462___ 47 CTTGTGCCTATCAACAAGGAAAACAGGGCCAGAATGTTGAAAAAGAATCA 96
|.||.|.|..|| ||||.|..|||.| |||.|||.||
BL02997___yla 50 CCTGCGGCATTC-------AAAATAATGCCCG--------AAATGAAGCA 84
BSNT_02462___ 97 ACAAGA------CAGCAGGAGACTAAACCGATTCACGTAAAGGACACAAC 140
| |.|| |.|||..|| |||||||||.|||||..|||...|
BL02997___yla 85 A-ATGAGCTTCCCGGCAACAG-----ACCGATTCATGTAAAAAACAGCGC 128
BSNT_02462___ 141 TCAAGAAACAAAAGACAATGGAAC----AAGAACGGATATTGCCAAG-CA 185
.||.| ||.|..| |||| ||| ||||| |||| ||
BL02997___yla 129 CCAGG-------AGCCGGT-GAACCGCGAAG-ACGGA------CAAGCCA 163
BSNT_02462___ 186 TCTTGTCAGCGTTGC--TGAAAAAAACCCCGA------------CGTCAA 221
|| ||| ||..|| ||.|||.|.|.|||| .|||||
BL02997___yla 164 TC---TCA-CGGCGCCTTGTAAAGATCACCGAAAGCGTTCCGGGTGTCAA 209
BSNT_02462___ 222 GGATGCAACAGCCGTTGTGCTGGG--GGGTTATGCTGTTGTTGGGATTGA 269
.|||||.||.|||||.|||||.|| ||.| .||.||.||.||.|||||
BL02997___yla 210 TGATGCGACCGCCGTCGTGCTAGGCAGGCT--CGCCGTCGTCGGAATTGA 257
BSNT_02462___ 270 TGTCGATGATACTTTGGACAGAAGCAAAGTGGAAACCATTAAATATTCTG 319
|||..|.||.|.||||||..|.||||||||.|||.|||||||.|||||.|
BL02997___yla 258 TGTGAAAGACAATTTGGAACGCAGCAAAGTCGAATCCATTAAGTATTCGG 307
BSNT_02462___ 320 TAGCTCAGGCGCTAAAGAATGATCGATATGGCGCCAACGCAGTAGTCATT 369
|.|||.|.||.||..|||||||.|..|||||.||.|||||.|..||..|.
BL02997___yla 308 TCGCTGAAGCTCTGCAGAATGACCCTTATGGAGCAAACGCCGCCGTTGTC 357
BSNT_02462___ 370 GCTGATCCCGATACGGTAGGCCGCCTTCGCGAAATGAGCAGAGAAAT--C 417
||.||||||||.||.|||..||||||.||.|.||||.|||||||||| .
BL02997___yla 358 GCGGATCCCGACACTGTAAACCGCCTGCGGGCAATGGGCAGAGAAATTCA 407
BSNT_02462___ 418 AGCGAGGGCCATCCGGTAACAGGTATACTGGATGAATTAGCTGCAATTGT 467
||| |||.|.|||.||.|.|||.||.||.|||||..|.||.||.|||||
BL02997___yla 408 AGC--GGGACGTCCTGTCAAAGGGATTCTCGATGAGCTGGCAGCCATTGT 455
BSNT_02462___ 468 CGGCCGAGTGCTTCCCGAAGTGCCTAACGATGTGATTGACAATGAAGACG 517
|||.||.||.|||||.||||||||.|||||.| ||| .||||
BL02997___yla 456 CGGGCGCGTCCTTCCTGAAGTGCCGAACGACG-------CAA--CAGAC- 495
BSNT_02462___ 518 AACC-GCAAACAAAGC--AGCAAAAT--------GACCAATTAAAT---A 553
|||| |||||||||.| | |||||| |||||..|.||| |
BL02997___yla 496 AACCAGCAAACAAATCCTA-CAAAATCCAACAACGACCAGCTGAATGAGA 544
BSNT_02462___ 554 GAAAACAGCAACAGGAAATGGAGAAGGAGCAAAACGATCAATCTGATC-A 602
||||.||..||| ||.|.||.|||.||||.||..||||||| ||.| |
BL02997___yla 545 GAAACCAAAAAC---AACTCGAAAAGAAGCAGAATAATCAATC-GAACAA 590
BSNT_02462___ 603 TCATATGAAAAA---GAACAACAATGACTAA 630
.||||||||||| | ||.||||.|
BL02997___yla 591 ACATATGAAAAATCGG--CAGCAATAA---- 615
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