Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05940 and BL02960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05940___yxkH.1.5803.seq
# -bsequence dna-align/BL02960___yxkH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05940___yxkH-BL02960___yxkH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05940___yxkH-BL02960___yxkH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05940___yxkH
# 2: BL02960___yxkH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 903
# Identity: 605/903 (67.0%)
# Similarity: 605/903 (67.0%)
# Gaps: 126/903 (14.0%)
# Score: 1943.5
#
#
#=======================================
BSNT_05940___ 1 ----ATGAAACG--ATTGTT-TTTAAGC-ATCTTTCTT--TTGGGCAGCT 40
|..||||| |.|||| .||..|| .|||.|.|| |.|||..|||
BL02960___yxk 1 GTGAAAAAAACGAAAATGTTACTTGTGCTGTCTATGTTGATGGGGGTGCT 50
BSNT_05940___ 41 GTTTGGCTCTTGCGGCTTGCGCTGATCAAGAGGCGAATGCAGAGCAGCCG 90
||..||.|.||.||| |||.||..|.||.|.||||.|
BL02960___yxk 51 GTACGGGTGTTCCGG----------TCATGAAACAAAAGGAGAGGA---- 86
BSNT_05940___ 91 ATGCCAAAAGCGGAACAAAAGAAACCGG---AAAAAAAGGCAGTACAAGT 137
||||.|.||||.|||.| ||| |||||..||||..||||
BL02960___yxk 87 -----AAAAACAGAACCAAATA---CGGCTCAAAAAGCGGCAAAACAA-- 126
BSNT_05940___ 138 TCAGAAAAAAGAAGACG-----------ATACATCCGCATGGATCAAAAC 176
|| ||||.||.||.|| || |||||...|||.||||
BL02960___yxk 127 TC--AAAACAGCAGGCGGAACATGATCCAT-CATCCAAGTGGGTCAA--- 170
BSNT_05940___ 177 AGAGAAA-------CCGGCAAAGCTGCCGATTTTGATGTACCACAGCATT 219
||.|||| ||.||| |.||||||.|.|||||.|||||||||
BL02960___yxk 171 AGTGAAAAGCCCGGCCCGCA----TTCCGATTCTCATGTATCACAGCATT 216
BSNT_05940___ 220 TCTTCAGGAAACAGCCTCCGTGTGCCAAAGAAA---GAATT-CGAGGCGC 265
||.||||||||||||||.||.||.|| |.|| ||||| ||.|| ||
BL02960___yxk 217 TCCTCAGGAAACAGCCTGCGCGTACC---GGAAGGGGAATTCCGCGG-GC 262
BSNT_05940___ 266 ATATGAAGTGGCTTCATGATAACGGCTATCAGACATTAACGCCGAAAGAG 315
|||||||||||||..|.||||||||||||.|.||.||.||.||..|.||.
BL02960___yxk 263 ATATGAAGTGGCTGAAGGATAACGGCTATTACACGTTGACACCTGAGGAA 312
BSNT_05940___ 316 GCATATCTCATGCTGACGCAGGATAAAAAACCGAGTGAGAAGTGCGTGCT 365
||.|||.|..|..|.|||||.|||||||..||||||||.||.||||||||
BL02960___yxk 313 GCCTATATTGTCTTAACGCAAGATAAAATGCCGAGTGATAAATGCGTGCT 362
BSNT_05940___ 366 GATCACATTTGATGACGGGTACACCGACAATTATCAAGATGCGTATCCGG 415
|||.||.|||||||||||.||.||.||.||.|.|.||.|.|||||.|||.
BL02960___yxk 363 GATTACGTTTGATGACGGTTATACAGATAACTTTGAAAAAGCGTACCCGA 412
BSNT_05940___ 416 TGCTGAAAAAGTACGGGATGAAGGCAACGATTTTTATGATCGGCAAATCG 465
|..|||||...||.|||||||||||.||.|||||||||||||||||||||
BL02960___yxk 413 TTTTGAAAGGCTATGGGATGAAGGCGACAATTTTTATGATCGGCAAATCG 462
BSNT_05940___ 466 ATCGGACATAGGCACCATCTGACAGAGGACCAAATGAAGGAAAT--GGCA 513
.|.||....|.|.|||||.||||.|||.|.||||||||.||||| |||.
BL02960___yxk 463 GTTGGCGGGAAGAACCATTTGACGGAGAAACAAATGAATGAAATGAGGCG 512
BSNT_05940___ 514 CAGCACGGCATATCGATTGAAAGCCATACGATTGACCACGTTGAGCTGAA 563
.| |||||||.||||||.||||||||||.|||.|.||||||||..||||
BL02960___yxk 513 AA--ACGGCATTTCGATTCAAAGCCATACCATTCATCACGTTGAATTGAA 560
BSNT_05940___ 564 CGGATTAACGCCTCAACAGCAGC------AAAGCGAGATGGCTGA----T 603
||||.|..|.||...|||||||| ||| ||| |
BL02960___yxk 561 CGGACTGGCACCGGGACAGCAGCTCGATGAAA----------TGACGCGT 600
BSNT_05940___ 604 TCGAAAAAGCTGTTCGACCACATGTTTCATCAG-CAAACCAC---CATCA 649
||.|||..||||||.||.|.||||| |||| ||||..|| .||..
BL02960___yxk 601 TCCAAAGCGCTGTTTGATCGCATGT----TCAGCCAAAATACGGTGATGC 646
BSNT_05940___ 650 TCAGCTATCCGGTAGGGCGCTACAATGAGGAGACGCTGAAGGCCGCTGAA 699
|.|||||||||||.|||||||||||.||.||.||||||||...||| ||
BL02960___yxk 647 TGAGCTATCCGGTCGGGCGCTACAACGAAGATACGCTGAAACTCGC--AA 694
BSNT_05940___ 700 A--AAACAGGCTATCAAATGGGCGTGACGACAGAACCGGGCGCGGCTTCG 747
| |..|||||||||||||||.|||.||.|||||||||||.|||||.||.
BL02960___yxk 695 AGCAGGCAGGCTATCAAATGGCCGTCACAACAGAACCGGGAGCGGCATCT 744
BSNT_05940___ 748 AGAGACCAGGGAATGTATGCCCTCCATCGTGTGCGCGTGTCCCCAGGCAT 797
||.||.|||||.||||||||.|||||.||.||.||..|.||.||.||.||
BL02960___yxk 745 AGGGATCAGGGGATGTATGCGCTCCACCGCGTCCGAATCTCGCCGGGGAT 794
BSNT_05940___ 798 GTCG--GGCTCGGCTTT-------TGGTGCGTACATCGAATCAATGA-AA 837
|||| || .||.|||| ||||| |.|||..|.| || ||
BL02960___yxk 795 GTCGCCGG-ACGCCTTTGGGAAAATGGTG-GAACACAGCA-----GACAA 837
BSNT_05940___ 838 TAA 840
||.
BL02960___yxk 838 TAG 840
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