Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02988 and BL02953

See Amino acid alignment / Visit BSNT_02988 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:40
# Commandline: needle
#    -asequence dna-align/BSNT_02988___yneR.1.5803.seq
#    -bsequence dna-align/BL02953___yneR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02988___yneR-BL02953___yneR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02988___yneR-BL02953___yneR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02988___yneR
# 2: BL02953___yneR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity:     216/294 (73.5%)
# Similarity:   216/294 (73.5%)
# Gaps:          12/294 ( 4.1%)
# Score: 753.0
# 
#
#=======================================

BSNT_02988___      1 ATGAATATGACAATTAACGAAGACGCATTGAACTGGTATAAAGAA-GAAC     49
                     .|||||.|||.||||||.|||||.||..|.||.|||||| ||||| ||.|
BL02953___yne      1 GTGAATTTGAAAATTAATGAAGAGGCGCTTAAATGGTAT-AAGAACGAGC     49

BSNT_02988___     50 TCGATTTGGAAAG-CGGAGACCAGGTTCGCTTTTTCGTCCGCTATGGAGG     98
                     |.||||| .|||| .||.||.|||||||||||.||.||||||||.|||||
BL02953___yne     50 TTGATTT-AAAAGAAGGTGATCAGGTTCGCTTCTTTGTCCGCTACGGAGG     98

BSNT_02988___     99 CTGCAGCAACGTTCAAAAGGGTTTTTCTCTCGGTGTAGCGAAAGATGCCC    148
                     .||||||||.||||||||.||.||.||.||.||.||..|.|||||||..|
BL02953___yne     99 ATGCAGCAATGTTCAAAAAGGCTTCTCCCTTGGGGTCTCAAAAGATGAGC    148

BSNT_02988___    149 CACAAGAGGC----TGGAGTCACTGCAGAAGCTGACGGCATTACCTTCTT    194
                     |.||    ||    .||.||.|.|||.|||...|||||||||||.||.||
BL02953___yne    149 CGCA----GCAAATCGGTGTAAGTGCGGAAAAAGACGGCATTACGTTTTT    194

BSNT_02988___    195 TATTGAAGAAAGTGATTTATGGTACTTCGATAACCACGACCTTCTCGTCA    244
                     ..||||||||||.|||.|||||||.|||||...|||.||.||.||.||||
BL02953___yne    195 CGTTGAAGAAAGCGATGTATGGTATTTCGACGGCCATGATCTGCTTGTCA    244

BSNT_02988___    245 GCTATTCAGAAGACGCTGATGAACCGGTTTTTGAATACCAATAA    288
                     .||||...|||...||.||.|||||.|||||||||||.||.|||
BL02953___yne    245 CCTATAACGAATCTGCGGAAGAACCTGTTTTTGAATATCAGTAA    288


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