Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02972 and BL02950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_02972___cotM.1.5803.seq
# -bsequence dna-align/BL02950___cotM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02972___cotM-BL02950___cotM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02972___cotM-BL02950___cotM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02972___cotM
# 2: BL02950___cotM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 459
# Identity: 252/459 (54.9%)
# Similarity: 252/459 (54.9%)
# Gaps: 135/459 (29.4%)
# Score: 694.5
#
#
#=======================================
BSNT_02972___ 1 ATGAACCATTCAAAACGCAACGA-TGCGAATGATTTCGAT--AGTATGGA 47
||||...||.|||||||...||| |.||.| |||||.||| ||.|||||
BL02950___cot 1 ATGACAAATACAAAACGTTTCGATTCCGCA-GATTTTGATAAAGAATGGA 49
BSNT_02972___ 48 TGAATGGCTTCGGCAATTTTTTGAAGACCC-CTTCGCCTGGTACGACGAA 96
|||| .||.|||.||||.||||| .|||.||| .||.||.|||
BL02950___cot 50 TGAA--------ACAGTTTGTTGACGACCCTTTTCTCCT-CTATGATGAA 90
BSNT_02972___ 97 ACATTGCCTATTGATTTATATGAAACAAGTCAGC--AGTATATTATAGAA 144
||.||.||.|||||..|.||||||||.|| || | |.|||||.||.|||
BL02950___cot 91 ACTTTACCGATTGACCTTTATGAAACGAG-CA-CTGAATATATAATTGAA 138
BSNT_02972___ 145 GCGGAT-------------------------CTGACTT----TTTTACAG 165
||.||| .|||||| |||| |||
BL02950___cot 139 GCAGATTTAAGCCACTTGAATGTCCGGCATCTTGACTTGACGTTTT-CAG 187
BSNT_02972___ 166 CCTAC----ACAAG-TAACAGTT---ACCCTTTCTGGATGCGAGTTCATC 207
.|||| .|||| |..||||| ||| ||||.| ||.|
BL02950___cot 188 GCTACGATTTCAAGCTTGCAGTTAAAACC-------GATGAG----CAGC 226
BSNT_02972___ 208 TTAACTGTCAAATCGTCAGGACAGACTTTTGAAAAACAAATGATGCTTCC 257
||.|| |..|||||| .||||||||||
BL02950___cot 227 TTTAC-GAGAAATCG------------------------CTGATGCTTCC 251
BSNT_02972___ 258 TTTTTATTTTAATGACAAAAACATTCAAGCCGAATGCGAAAATCAA-ATA 306
|||.|.|||.|||||||||.|.||..||||.||||||||||| ||| ||.
BL02950___cot 252 TTTCTTTTTGAATGACAAACAGATCGAAGCGGAATGCGAAAA-CAACATT 300
BSNT_02972___ 307 CTCACAGTCGCCGTCAATAAAGAAACA---GAAGATGGCTCTTCTTTTTC 353
||..||||.....|||||||||||.|| .||||||.|..|||..||||
BL02950___cot 301 CTTGCAGTTAAAATCAATAAAGAATCAAGCAAAGATGACATTTCGCTTTC 350
BSNT_02972___ 354 TCTTCAAT-TTCCTCTCAGCTAA--------------------------- 375
..||||| |||||.|.|..|.|
BL02950___cot 351 -AATCAATATTCCTTTTATATCAAACCTGCACAACAAGCAGAACCCGGAC 399
BSNT_02972___ 375 --------- 375
BL02950___cot 400 AGCGCTTAA 408
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