Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02967 and BL02937
See
Amino acid alignment /
Visit
BSNT_02967 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_02967___ccdA.1.5803.seq
# -bsequence dna-align/BL02937___ccdA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02967___ccdA-BL02937___ccdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02967___ccdA-BL02937___ccdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02967___ccdA
# 2: BL02937___ccdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 730
# Identity: 497/730 (68.1%)
# Similarity: 497/730 (68.1%)
# Gaps: 44/730 ( 6.0%)
# Score: 1555.0
#
#
#=======================================
BSNT_02967___ 1 ATGGGAGACGTGAATTATTTTTTGACATTCGGAGCGGGGTTTTTATCCTT 50
||||..||..|.||||||.||.|..|.|||||.||.||||||.||||.||
BL02937___ccd 1 ATGGCTGATATCAATTATATTCTCGCTTTCGGTGCAGGGTTTCTATCGTT 50
BSNT_02967___ 51 TATTTCGCCTTGCTGCCTGCCGCTTTACCCAGCTTTTTTGTCATATATTA 100
|||||||||.|||||||||||||||||.||.||||||||.||||||||||
BL02937___ccd 51 TATTTCGCCATGCTGCCTGCCGCTTTATCCCGCTTTTTTATCATATATTA 100
BSNT_02967___ 101 CAGGGGTCAGCATGGACGATGTAAAA-----ACTGAAAAGCTGCTGCTGC 145
|.||.||||||||| .||.||| .||||.||.||..||.|.|
BL02937___ccd 101 CCGGTGTCAGCATG-----AGTGAAATCCATTCTGACAAACTTATGTTTC 145
BSNT_02967___ 146 AGAAAAGAAGCTTGTTTCATACTTTGTGTTTTT--TGCTTGGCTTTTCAG 193
|.|||||.||||||.|.||||| .||.||||| ||.|.||||||||..
BL02937___ccd 146 AAAAAAGGAGCTTGGTACATAC--GGTCTTTTTCCTGATCGGCTTTTCGA 193
BSNT_02967___ 194 TCATTTTTATTGCTTTAGGCTATGGAACATCTTTTATTGGCAGCC--TGT 241
|.||.|||.|.||..|.|||||..|.||.||..||.|.|| |.| |.|
BL02937___ccd 194 TGATCTTTGTGGCACTCGGCTACAGCACGTCGCTTGTCGG--GTCGTTTT 241
BSNT_02967___ 242 TTAGGGATTATCACGATGC-GATTCGGCAAATTGGCGCGTTGCTTATTAT 290
|||.|||||||||..| || .||..||||..||||.|||.|..||||.||
BL02937___ccd 242 TTAAGGATTATCATCA-GCTCATCAGGCAGCTTGGTGCGGTTTTTATCAT 290
BSNT_02967___ 291 TTTGTTCGGTTTCATTACACTCGGTGTGTTCCGGCCTGAGGCTATGATGA 340
.||.|||||.||..|.||..|.||.||.||...||||||...|.|.||||
BL02937___ccd 291 CTTTTTCGGATTTGTCACTTTGGGGGTTTTTAAGCCTGAATTTTTAATGA 340
BSNT_02967___ 341 AAGAGCGGAGAATCCATTTTAAGCATAAACCAAGC----GGGTTTTTAGG 386
||||..||.|..||||.|||| |||.||.|| .|||.| |
BL02937___ccd 341 AAGAAAGGCGCCTCCAATTTA-----AAAACAGGCCTGGAGGTCT----G 381
BSNT_02967___ 387 GTCGG-----TCTTAATCGGAATGGCATTTGCAGCTGGATGGACACCATG 431
.|||| ||..||||||||||||||||||.||.||.|||||.||.||
BL02937___ccd 382 CTCGGTTCCATCGGAATCGGAATGGCATTTGCCGCCGGCTGGACGCCCTG 431
BSNT_02967___ 432 TACCGGTCCGATATTAGCTGCTGTTATCACACTTGCAGGCACCAATCCGG 481
.|||||.|||||..|.||.||.|||||..||||.||.||.||.||.|||.
BL02937___ccd 432 CACCGGCCCGATTCTTGCAGCGGTTATTGCACTCGCCGGAACGAACCCGA 481
BSNT_02967___ 482 GCTCAGCGGTGCCATACATGATGTTATATGTACTCGGTTTTGCGG--TAC 529
..||.||.|||||.||.|||..|.|.||||.||||||.|| |.| |.|
BL02937___ccd 482 TGTCGGCCGTGCCTTATATGGCGCTTTATGCACTCGGATT--CAGCTTGC 529
BSNT_02967___ 530 CGTTTCTTTTATTGTCTTTTTTTATCACAAAGCTGAAGTGGATAAGGAAG 579
|||||||..|..||||||||||.||.||||||.||||.|||.|..|||||
BL02937___ccd 530 CGTTTCTGCTTCTGTCTTTTTTCATTACAAAGATGAAATGGCTTCGGAAG 579
BSNT_02967___ 580 AACCAGCTTTTCATTATGAAAGCT-GGTGGCGTTTTGATGATTGTGATTG 628
.|.|||||..||||.||| |||.| ||.||.|||...||||||||..|.|
BL02937___ccd 580 CATCAGCTCATCATCATG-AAGATCGGCGGAGTTGCAATGATTGTAGTCG 628
BSNT_02967___ 629 GTGTGCTGTTATTCTTTAATTGGATGAGCCTGATCATTATTTTGCTGTCA 678
|..|.|||.|.||||||.|.|||||||.....||||||||..|..|||||
BL02937___ccd 629 GCATCCTGCTGTTCTTTGACTGGATGACGAAAATCATTATCGTATTGTCA 678
BSNT_02967___ 679 GATCTTTTTGGAGGCTTTACTGGTTTTTGA 708
...||.||.||.|..||.|..||.||||.|
BL02937___ccd 679 AGCCTGTTCGGCGATTTCAGAGGCTTTTAA 708
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.