Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02962 and BL02935
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:39
# Commandline: needle
# -asequence dna-align/BSNT_02962___yneE.1.5803.seq
# -bsequence dna-align/BL02935___yneE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02962___yneE-BL02935___yneE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02962___yneE-BL02935___yneE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02962___yneE
# 2: BL02935___yneE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 465
# Identity: 321/465 (69.0%)
# Similarity: 321/465 (69.0%)
# Gaps: 45/465 ( 9.7%)
# Score: 1015.5
#
#
#=======================================
BSNT_02962___ 1 ATGGAACGTCACTACTATACGTACCTGATCAAAGAGGAATTTGCCAATCA 50
||||||||.||.||.||||||||..||||..|||||||||||||||..||
BL02935___yne 1 ATGGAACGCCATTATTATACGTATTTGATAGAAGAGGAATTTGCCAGCCA 50
BSNT_02962___ 51 CTATTTCGGCCGGGAATCGGTTATGTTTGAGCTGTTTCAAGACTATCATT 100
.|||||.||..|.||.||.||.|||||..|.||||||.|.||.|||||||
BL02935___yne 51 TTATTTTGGAAGAGAGTCCGTCATGTTCAAACTGTTTTACGATTATCATT 100
BSNT_02962___ 101 GGACAAGCCTTGA--AAAGCAGCAGTATGAAATGACAGAGAAACAGATTC 148
||||.||||..|| ||| |||.|.||.|..|.|.|||||||||..
BL02935___yne 101 GGACGAGCCCCGATCAAA-----AGTCTCAATTAGCCGCGAAACAGATCG 145
BSNT_02962___ 149 AATATATTACACAACC-AATCCCGATTTTACATATGCATCAGCGGTTAAA 197
|.|.|||||||.|||| |.|||||.|..| |||||.|| || |||
BL02935___yne 146 AGTTTATTACAAAACCGATTCCCGCTGCT-CATATACA-CA------AAA 187
BSNT_02962___ 198 -AATGAATTTAAAC----------AAGACGGAT-TACAGGCAGCTGGATT 235
||||||..|.||| ||||| | |||| |||.|.||.|
BL02935___yne 188 GAATGAAAATGAACCTCTGCCGGGAAGAC---TATACA--CAGGTTGACT 232
BSNT_02962___ 236 ATATTTATAGAATAGCTT-TGCCGAAAGCAAAAGGCCACGCGACGTTTAT 284
||.|.||.|| ||.|.|| |.| |||||||...|||..|.|||||
BL02935___yne 233 ATGTATACAG-ATTGATTGTTC------CAAAAGGAAGCGCTTCTTTTAT 275
BSNT_02962___ 285 GATGAAGGAGC-ACATGATAGAAATTGTGGCTTCGGG-AGATTACGAGGC 332
.||.||.||.| .||| ||.||.|||.||||...||| ..||| |||.||
BL02935___yne 276 TATCAAAGACCGTCAT-ATTGAGATTTTGGCAAAGGGTCCATT-CGATGC 323
BSNT_02962___ 333 AGAAACGATATTCTTTGAAGTGTTAAGAAAAGTAAGCCCTTGCTTTTTAG 382
.||||||.|.||||||||.||.||..|||||||.||.||.||.|||.|.|
BL02935___yne 324 CGAAACGGTTTTCTTTGAGGTATTGCGAAAAGTCAGTCCGTGTTTTCTTG 373
BSNT_02962___ 383 CAATGGATTTCAATTCGAAGCGTTACGGATGGCTAAATCCGGTGAAAGAA 432
|.||||||||.|||..|||.|||||.||.|||||.||.||.|||||||||
BL02935___yne 374 CGATGGATTTTAATATGAAACGTTATGGCTGGCTGAACCCTGTGAAAGAA 423
BSNT_02962___ 433 AGAAATTTTGTCTAA 447
|||||||||||.|||
BL02935___yne 424 AGAAATTTTGTATAA 438
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