Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03513 and BL02917

See Amino acid alignment / Visit BSNT_03513 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:30
# Commandline: needle
#    -asequence dna-align/BSNT_03513___yqkF.1.5803.seq
#    -bsequence dna-align/BL02917___yqkF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03513___yqkF-BL02917___yqkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03513___yqkF-BL02917___yqkF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03513___yqkF
# 2: BL02917___yqkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 943
# Identity:     691/943 (73.3%)
# Similarity:   691/943 (73.3%)
# Gaps:          44/943 ( 4.7%)
# Score: 2364.0
# 
#
#=======================================

BSNT_03513___      1 ATGAGAAA----GCGCAAATTGGGTACA-TCTGATTTAGACATTAGTGAA     45
                     ||||.|||    .|||    |.|| ||| ||.||||||.|..|.||||||
BL02917___yqk      1 ATGAAAAAAAGGACGC----TCGG-ACATTCCGATTTACAGGTGAGTGAA     45

BSNT_03513___     46 GTCGGACTCGGCTGTATGTCTCTTGGAACTGAAAAAAACAAAGCATTGTC     95
                     |||||.||.|||||.||||||||.|||||.||.|||||..|.|||.||||
BL02917___yqk     46 GTCGGCCTAGGCTGCATGTCTCTCGGAACGGACAAAAAGCACGCACTGTC     95

BSNT_03513___     96 CATTCTGGATGAAGCGATCGAGCTCGGCATCAACTATTTGGACACAGCGG    145
                     .||||||||||||||..|.||.|||||||||||.||.|||||.||.||.|
BL02917___yqk     96 AATTCTGGATGAAGCTTTGGAACTCGGCATCAATTACTTGGATACTGCCG    145

BSNT_03513___    146 ATTTGTATGACCGGGGACGCAACGAAGAAATGGTCGGTGATGCGATCCAA    195
                     |..||||.||....|||||||||||||||||.||||||||.||||| |||
BL02917___yqk    146 ACCTGTACGATTTTGGACGCAACGAAGAAATTGTCGGTGAAGCGAT-CAA    194

BSNT_03513___    196 AAC-AGACGCCAGGATATTATTCTGGCAACAAAAGCGGGAAACCGTTGGG    244
                     |.| ||.|||||.|||.|.||.||.||.|||||||||||||||||.||||
BL02917___yqk    195 ATCAAGGCGCCAAGATGTCATCCTCGCCACAAAAGCGGGAAACCGCTGGG    244

BSNT_03513___    245 ATGACGGAAGCGAGGGCTGGTATTGGGACCCTTCAAAAGCTTACATAAAA    294
                     |.||.||||....||||||||..|||||.||....|||||.|||||||||
BL02917___yqk    245 AGGAAGGAAAACCGGGCTGGTTCTGGGATCCCCGGAAAGCATACATAAAA    294

BSNT_03513___    295 GAGGCGGTAAAAAAGAGCCTTACA-CGTCTGAAAACAGATTATATCGACC    343
                     ||.||.||.|||...|| ||||.| ||.|||.||||.||.||||||||.|
BL02917___yqk    295 GAAGCCGTCAAACGCAG-CTTAAAGCGGCTGCAAACCGACTATATCGATC    343

BSNT_03513___    344 TTTATCAGCTTCACGGCGGCACGATAGAGGACAACATTGATGAAACGATC    393
                     ||||||||||.||.|||||.|||||.||.||.|||||.||.||||||||.
BL02917___yqk    344 TTTATCAGCTGCATGGCGGAACGATCGAAGATAACATCGACGAAACGATT    393

BSNT_03513___    394 GAAGCGTTTGAGGAATTAAAACAAGAAGGTGTCATCCGCTACTACGGCAT    443
                     ||.||.|||||.||.||||||||.|||||.|||||||||.|.||||||||
BL02917___yqk    394 GAGGCCTTTGAAGAGTTAAAACAGGAAGGCGTCATCCGCCATTACGGCAT    443

BSNT_03513___    444 TTCTTCCATCCGCCCGAATGTGATTAAAGAATATGTGAAAAAATCAAACA    493
                     |||.||.|||||.|||||.||.||.||.|||||.||.|||||||||||||
BL02917___yqk    444 TTCCTCGATCCGGCCGAACGTCATAAAGGAATACGTCAAAAAATCAAACA    493

BSNT_03513___    494 TCGTCAGCA-TTATGATGCAATTCAGCCTGTTTGACAGACGCCCTGAGGA    542
                     |||||| || |.||||||||||.||||.||||.||||||||.||||||||
BL02917___yqk    494 TCGTCA-CAGTCATGATGCAATACAGCTTGTTGGACAGACGGCCTGAGGA    542

BSNT_03513___    543 ATGGCTCCCGCTTTTAGAGGAACATCAAATCAGCGTAGTCGCCAGAGGTC    592
                     ||||||..|.||..|.||.||||||..|||||||||..|.||.|||||.|
BL02917___yqk    543 ATGGCTTTCTCTCCTTGAAGAACATGGAATCAGCGTGATTGCAAGAGGAC    592

BSNT_03513___    593 CTGTTGCCAAA-GGACTCTTAACTGAAAAACCGCTTGATCAAGCTTCAGA    641
                     ||.|.||.||| |||.|| |.||.||||||||.||  .|| ||.|.||.|
BL02917___yqk    593 CTCTGGCAAAAGGGATTC-TGACAGAAAAACCCCT--GTC-AGATGCAAA    638

BSNT_03513___    642 CAGCAT-GA--AACAAAA-CGGGTACTTGTCCTATTCATTCGAGGAACTG    687
                     | |||| ||  ||.|||| |||.||.||.||.|||||.|.|||.|||||.
BL02917___yqk    639 C-GCATCGATTAAGAAAAGCGGCTATTTATCATATTCCTACGATGAACTC    687

BSNT_03513___    688 A-CAAATGCACGCAAGGC---AATGGAGGAAGTGGCTCCCGATCTTTCCA    733
                     | ||||   || .|||||   .||.||..||...||.||.|||.|.|||.
BL02917___yqk    688 ATCAAA---AC-AAAGGCGGACATTGAAAAAACAGCGCCTGATTTATCCG    733

BSNT_03513___    734 TGACAGAAAAGTCGCTGCAGTATCTGCTAGCACAGCCGGCTGTCGCTTCA    783
                     ..||.||||...|||||.|||||.|.||.||.|||||||||||||...|.
BL02917___yqk    734 CAACCGAAACCGCGCTGAAGTATATTCTCGCCCAGCCGGCTGTCGGCGCG    783

BSNT_03513___    784 GTGATTACAGGCGCCAGTAAGATTGAGCAGTTACGGGAAAA----TATTC    829
                     ||.||..|.||.||.||.||..|....|||.|.||||||||    .|.||
BL02917___yqk    784 GTCATCCCCGGGGCGAGCAAACTCTCCCAGCTTCGGGAAAACGTTGAATC    833

BSNT_03513___    830 AGGCAGCAAATGCACGGCGTTTAACCGAAGAGGAAATCAAAGCGCTCCAA    879
                     .|.|.||    |.|||..|..|.||.|||.||||||||||||||||||..
BL02917___yqk    834 TGTCGGC----GGACGCAGCCTGACAGAACAGGAAATCAAAGCGCTCCGC    879

BSNT_03513___    880 TCTCATACGAAACAAGACATTTACAAAACTCATCGCTCATAG-    921
                     |.|.||||.||||..|||.|.||||...|.||||||..|| | 
BL02917___yqk    880 TTTTATACAAAACGCGACGTGTACACTGCGCATCGCGAAT-GA    921


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03513 and BL02917

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
