Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03517 and BL02916
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:30
# Commandline: needle
# -asequence dna-align/BSNT_03517___yqkD.1.5803.seq
# -bsequence dna-align/BL02916___yqkD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03517___yqkD-BL02916___yqkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03517___yqkD-BL02916___yqkD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03517___yqkD
# 2: BL02916___yqkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1002
# Identity: 640/1002 (63.9%)
# Similarity: 640/1002 (63.9%)
# Gaps: 156/1002 (15.6%)
# Score: 1910.0
#
#
#=======================================
BSNT_03517___ 1 ---TTGAAGAAAATCCTTTTGGCCATTGGC-GCTCTCGTAAC-----AGC 41
|||| |||||| |||| |||.|||.|.| .||
BL02916___yqk 1 ATGTTGA----------TTTGGC---TGGCTGCTATCGGAGCGGTTTTGC 37
BSNT_03517___ 42 TG-TCAT-----CGCAATCGGAAT-TGTTTTTTCAAATATGATTCTATTC 84
|| |||| ||| ||||||| |.||| ||.||.||.|.||
BL02916___yqk 38 TGTTCATTGCTGCGC--TCGGAATCTATTT-------TACGAATCAAATC 78
BSNT_03517___ 85 AT---CAAGAAAAAA---ACGGATGAAGACATTATCAAAAGAGAGACAGA 128
|| ||..|||||| ||.||..||.|||||||..|..|.||.||.|.
BL02916___yqk 79 ATGTACATTAAAAAACGGACCGACCAATACATTATTGAGCGGGAAACTGC 128
BSNT_03517___ 129 CAACGGACATGATGTGTTTGAATCA--TTTGAG---------CAAATGGA 167
|.||||.|||.||| ..|||..| ||| .| |.||.|.|
BL02916___yqk 129 CGACGGCCATTATG---ACGAAAAAGCTTT-CGCCGCTCTCCCGAAGGAA 174
BSNT_03517___ 168 GAAAACCGCTTTTGTGATACCCTCCG------CTTACGGGTATGACATAA 211
||||.| ||||| || |||||||.||..|.||.|
BL02916___yqk 175 GAAATC------------ACCCT-CGCTTCTTCTTACGGCTACAATATTA 211
BSNT_03517___ 212 AAGGATACCATGTCGCA-CCGCATGACACACCAAACACTATCATCATCTG 260
||||.|||.|.|| ||| |||||..|.||...||||||..|.||.|||||
BL02916___yqk 212 AAGGGTACTACGT-GCACCCGCACAAAACGAAAAACACCGTGATTATCTG 260
BSNT_03517___ 261 CCACGGGGTGACGATGAATGTGCTGAATTCTCTTAAGTATATGCATTTAT 310
||||||.||||||||||||.||||||||||..|.||.||||||.||.|.|
BL02916___yqk 261 CCACGGAGTGACGATGAATCTGCTGAATTCAATCAAATATATGAATCTGT 310
BSNT_03517___ 311 TTCTTGATCTCGGCTGGAATGTGCTCATTTATGACCACCGCCGGCATGGC 360
||||.||||||||||||||.|...||||.|||||||||.|..||||.|||
BL02916___yqk 311 TTCTGGATCTCGGCTGGAACGCCGTCATATATGACCACAGAAGGCACGGC 360
BSNT_03517___ 361 CAAAGCGGCGGAAAGACGACCAGCTACGGATTTTACGAAAAGGATGATCT 410
..||||||||||||.|||||.||||||||||.|||.|||||..|.|||.|
BL02916___yqk 361 GCAAGCGGCGGAAAAACGACGAGCTACGGATATTATGAAAAAAACGATTT 410
BSNT_03517___ 411 CAATAAGGTTGTCAGCTGGCT----CAAAAACA----AAACAAATCATTG 452
.||.|.||||||||..||||| .||||||| .||||| |
BL02916___yqk 411 GAAAACGGTTGTCAATTGGCTGAGGGAAAAACACGGCGAACAA------G 454
BSNT_03517___ 453 CGGATTGATCGGAATTCACGGTGAGTCGATGGGAGCTGTGACCGCCCTGC 502
|| .|||||||.||||||||.||.||||||||.|||||.||..||||.|
BL02916___yqk 455 CG--CTGATCGGGATTCACGGCGAATCGATGGGCGCTGTCACAACCCTTC 502
BSNT_03517___ 503 TTTACGCTGGTGCACACTGCAGCGATGGC------GCTGATTTTTATATT 546
|||||||.|| |.|| ||||.| ||||||||||||.|.
BL02916___yqk 503 TTTACGCGGG-----AATG----GATGACGCCGAGGCTGATTTTTATGTG 543
BSNT_03517___ 547 GCCGATTGTCCGTTCGCATGTTTTGATGAGCAGCTTGCCTACCGGCTGAG 596
|||||.||||||||.||....|||||.||.|||||....||||||||||.
BL02916___yqk 544 GCCGACTGTCCGTTTGCCACATTTGAGGATCAGCTCATTTACCGGCTGAA 593
BSNT_03517___ 597 AGCGGA--------TTACAG--GCTCCCGTCTTGGCCCCTGCTCCCTATC 636
||..|| ||.||| |||..|.|.||| ||..||
BL02916___yqk 594 AGAAGATTTTCATCTTCCAGGAGCTTTCATTTTG----------CCGCTC 633
BSNT_03517___ 637 GCCGACTTCTTTTTGAAGCT-GAGGGGCGGCTATCGCGCACGTGAAGTAT 685
|||..|.|||||||| ||.| |.|||.||||||.|||...||||| |.|
BL02916___yqk 634 GCCAGCCTCTTTTTG-AGATGGCGGGACGGCTACCGCATCCGTGA--TGT 680
BSNT_03517___ 686 CTCCGCTT--GCTGTCATTGATAAAATCGAAAAGCCGATCCTCTTTATTC 733
||||.||| .|.|||.|.|..||.|||.||||.|||.|.||.||.||||
BL02916___yqk 681 CTCCCCTTTATCCGTCGTCGGAAAGATCAAAAAACCGGTGCTGTTCATTC 730
BSNT_03517___ 734 ACAGTAAGGATGATGACTACATTCCTGTTTCTTCAACCGAGCGGCTTTAT 783
||||.|||.|.||.|||||.||.||.|.|...||||.|||...||||||.
BL02916___yqk 731 ACAGCAAGCACGACGACTATATCCCGGCTGAATCAAGCGAAATGCTTTAC 780
BSNT_03517___ 784 GAAAAGAAACGCGGGCCGAAAGCGCTGTACATTGCCGAGAACGGTGAACA 833
||.||.||||..|||..||||..|||.||.|||||.||.|..||.|..||
BL02916___yqk 781 GAGAAAAAACCGGGGAAGAAACGGCTTTATATTGCTGAAAGAGGAGCGCA 830
BSNT_03517___ 834 CGCCATGTCATATACCAAAAATCGGGATACGTACCGAAAAACA--GTGCA 881
|||.|||...||.|||.||||..|..|.|..||| ||||||| ||||.
BL02916___yqk 831 CGCAATGAGCTACACCCAAAACAGAAACAGCTAC--AAAAACACGGTGCG 878
BSNT_03517___ 882 GGAGTTTTT---AG-----ACAA-----CATGAATGATTC-AAC-AGAAT 916
|||.|||.| || |||| ||..||..|..| ||| ||.||
BL02916___yqk 879 GGACTTTCTTCAAGAAATCACAAACCGGCACAAAGAAGGCGAACGAGCAT 928
BSNT_03517___ 917 AA 918
||
BL02916___yqk 929 AA 930
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