Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01631 and BL02888
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01631___yhdH.1.5803.seq
# -bsequence dna-align/BL02888___yhdH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01631___yhdH-BL02888___yhdH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01631___yhdH-BL02888___yhdH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01631___yhdH
# 2: BL02888___yhdH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1407
# Identity: 989/1407 (70.3%)
# Similarity: 989/1407 (70.3%)
# Gaps: 99/1407 ( 7.0%)
# Score: 3251.0
#
#
#=======================================
BSNT_01631___ 1 TTGTCTGAGC-------AAAAAACAGTCCAA--TGGGCTTCGAAAATTGG 41
.||||| .||..|||| ||| |||||.||.|||.||||
BL02888___yhd 1 ----ATGAGCGACCGCAGAATGACAG--CAAAGTGGGCATCCAAACTTGG 44
BSNT_01631___ 42 TTTCGTCATGGCAGCGGCCGGCTCGGCTATCGGCTTGGGCGCGATTTGGA 91
.||.||..|.||.||.||.||.||.||.|||||..||||.||||||||||
BL02888___yhd 45 ATTTGTTCTCGCCGCCGCGGGGTCCGCCATCGGTCTGGGAGCGATTTGGA 94
BSNT_01631___ 92 AGTTCCCTTACGTAGCGGGGACCAATGGGGGAGGAGCCTTTTTTCTTATC 141
||||.||.||.||.|||||.||.|..||||||||.||.|||||.|||.|.
BL02888___yhd 95 AGTTTCCCTATGTGGCGGGAACGAGCGGGGGAGGCGCATTTTTCCTTGTG 144
BSNT_01631___ 142 TTCGTGTTATTTACCATCCTCTTAGGCTATCC---GCTTTTGGTGGGGGA 188
||.||..|||||||.||.||..|.||.||.|| ||||| |||||||
BL02888___yhd 145 TTTGTCCTATTTACGATACTGCTGGGATACCCCCTGCTTT---TGGGGGA 191
BSNT_01631___ 189 ATTTATTTTTGGAAGACGGAA----CCAGACGAATGCCATTGATGCA--T 232
||||.|.|| ||.|.||| |||..||.|.||.||.| ||| |
BL02888___yhd 192 ATTTGTATT----AGGCCGAAAAAGCCAATCGGACGCTATCG--GCACCT 235
BSNT_01631___ 233 ATAAAAAAGAAGCGCC-GCGATCAGCTTGGTTTCTTACGGGGTGGATCGG 281
||.|||||..|||||| |.|| |..|||||.|..|.||.||.||||||||
BL02888___yhd 236 ATCAAAAAATAGCGCCAGGGA-CGCCTTGGGTGATCACAGGCTGGATCGG 284
BSNT_01631___ 282 CGTAGCCGCGTGTTTCTTAGTGCTGTCGTTTTACAGTGTAATCGGGGGAT 331
..|.|||||.||.|||.|.||.||||||||||||||.||.|||||.||.|
BL02888___yhd 285 AATCGCCGCCTGCTTCCTTGTCCTGTCGTTTTACAGCGTGATCGGCGGCT 334
BSNT_01631___ 332 GGATTTTGCTGTATATCGTAAAAACAGCGTCAGGATCACTGTCCGGGCTT 381
||||||||||.||||||.|.|||.|||...|.||.|||.||||.||
BL02888___yhd 335 GGATTTTGCTTTATATCATTAAAGCAGTAACCGGTTCATTGTCGGG---- 380
BSNT_01631___ 382 TCTCAAGCA---CAG-TATGGCGCTCTTTTTGCTTCTATTATCCAAAATC 427
|||||.||| |.| ||.||.|..||.||.|.|||.||.||||||.|||
BL02888___yhd 381 TCTCACGCAGGCCGGATACGGGGAGCTATTCGGTTCGATCATCCAAGATC 430
BSNT_01631___ 428 CGGTGCAGACGCTCGCGGCTCAGCTTGTCTTTATGGCA--CTGACTGTAC 475
||.|||||||.||.||.||.|||||||..||||| || .||||..|.|
BL02888___yhd 431 CGCTGCAGACACTGGCAGCGCAGCTTGCGTTTAT--CATCATGACGATCC 478
BSNT_01631___ 476 TCGTTGTCGCAAGAGGGGTTCAAAAAGGGATTGAACGGGTAAGCGCGGTG 525
||||.||.||.|.|||.||.||||||||.||.||.||.||.||..||.|.
BL02888___yhd 479 TCGTCGTGGCGAAAGGTGTGCAAAAAGGAATCGAGCGCGTCAGTTCGATT 528
BSNT_01631___ 526 ATGATGCCGATTTTGTTTTTATTGTTTATTCTGCTCGTTCTTCGGTCTCT 575
|||||||||.|.||.|||.|.||.||||||..|||||||.|..||.||||
BL02888___yhd 529 ATGATGCCGCTATTATTTATTTTATTTATTGCGCTCGTTTTAAGGGCTCT 578
BSNT_01631___ 576 TACGCTTAATGGTGCAATGGAAGGCGTAAAGTTTCTGCTTGTGCCTCATT 625
.||||||.|...|||.||.||.|||||....||||||||||||||..|||
BL02888___yhd 579 GACGCTTGAGCATGCGATCGACGGCGTGCGTTTTCTGCTTGTGCCCGATT 628
BSNT_01631___ 626 TCGGCGATTTGACTCCGGAATCCATATTATTCGGGCTGGGACAGGCCTTC 675
|.|||....||||.|||.|..|.||..|.||.|.|||.|||||.||.|||
BL02888___yhd 629 TTGGCAGCCTGACGCCGCAGGCGATTCTTTTTGCGCTCGGACAAGCTTTC 678
BSNT_01631___ 676 TTTACGTTAACACTGGGGGTTTCGGTGATGGTGACCTACAGCTCCTATTT 725
|||||..|.||.||.||.||.||.|||||||||||.||||||||||||||
BL02888___yhd 679 TTTACACTGACGCTTGGCGTATCTGTGATGGTGACGTACAGCTCCTATTT 728
BSNT_01631___ 726 GCCGAAAACACAAAATATCCCT--CG--TTCGGCAGC-CTCCATTGTCTT 770
|.|.||..||||||| ||| || .||||| || .||.||.||..|
BL02888___yhd 729 GTCAAAGTCACAAAA----CCTTCCGAAGTCGGC-GCTGTCGATCGTGAT 773
BSNT_01631___ 771 GATGAATATCATT---GTGACACT-CTTGGCAGGTTTGGCTATTTTTCCG 816
.||||| |.|| ||.||.|| ||| ||.||.|||||.|||||||||
BL02888___yhd 774 CATGAA---CCTTGCCGTCACGCTGCTT-GCCGGCTTGGCGATTTTTCCG 819
BSNT_01631___ 817 GCGGTTTTCTCATTCGGTTTTCAGCCAAATGAAGGACCGACATTGCTGTT 866
||.||.||.||||||||..|||||||..||.|.||.|||||.||..|.||
BL02888___yhd 820 GCCGTCTTTTCATTCGGCCTTCAGCCGGATCAGGGGCCGACTTTATTATT 869
BSNT_01631___ 867 TACAGTGCTTCCGGCCGTTTTTGAACAGCTTCCGTTCGGCACGTTGTTTT 916
|.|.||.||.|||||.||||||||.|.||||||.|||||.|.|.||||||
BL02888___yhd 870 TGCGGTTCTGCCGGCAGTTTTTGACCGGCTTCCATTCGGGATGCTGTTTT 919
BSNT_01631___ 917 TTATCGGCTTTCT--CGTTGCATTTTTATTTGCAGCCTTAACCTCAGCAT 964
|||||||.|||.| || ||.||||||||.||.|||||.||.||.||.|
BL02888___yhd 920 TTATCGGATTTTTGACG--GCCTTTTTATTCGCCGCCTTGACTTCGGCTT 967
BSNT_01631___ 965 TTTCGATGGTTGAAATTATCGTTGCCACAATCGGAAAAGGGGATGAAAAG 1014
||||||||.|.||.||.||.|||||..|.||...||||||.||..|||.|
BL02888___yhd 968 TTTCGATGATCGAGATCATTGTTGCGGCCATTACAAAAGGCGACCAAACG 1017
BSNT_01631___ 1015 AAGAGAAAAAAACTGTCATGGACGAGCGGGCTTTTGATCTTTTTG--GTC 1062
||.||...||||..|.|.|||||||.|||.||||||| |||||| |||
BL02888___yhd 1018 AAAAGGGGAAAATGGACGTGGACGATCGGCCTTTTGA--TTTTTGCCGTC 1065
BSNT_01631___ 1063 GGAATCCCATGCTGCTTGTCTTATGG--TGTTTTGAGTGATGTGC---AC 1107
||.||.||.|.||||||||||||.|| ||.| |||||.|| .|
BL02888___yhd 1066 GGCATTCCTTCCTGCTTGTCTTACGGGATGCT-----TGATGAGCCGTTC 1110
BSNT_01631___ 1108 CTATTTGGCAAAACGTTTTTTGATATTGCCGATTTTACCGTCAGCAATGT 1157
.|.|||...||.||||||||||||...||.||||.|..||||||||||.|
BL02888___yhd 1111 ATTTTTAAGAAGACGTTTTTTGATGCGGCGGATTATGTCGTCAGCAATAT 1160
BSNT_01631___ 1158 TTTGATGC--CTTCAGGCGCTCTGTTAATTTCTCTATTTATCCCGCTGAA 1205
|||||||| ||| |||||.||.||.||.||..|.|||||.||||||||
BL02888___yhd 1161 TTTGATGCCGCTT--GGCGCGCTCTTTATCTCCATTTTTATTCCGCTGAA 1208
BSNT_01631___ 1206 AATTTCGAAAAGCGAACTCT-TG----GCTGAAATGCGAAATGGATCAAA 1250
|.|.||.|||..|||.||.| || |.|||||.|| ||||||||
BL02888___yhd 1209 ATTGTCCAAACACGATCTATATGAAGAGATGAAAAGC-----GGATCAAA 1253
BSNT_01631___ 1251 TGCAGGTAAAGCATTCTTTTA-CACATGGTTTTATTTGCTTCGTTTTATC 1299
.||.||.||||..|| ||||| |...|||||||||.|.||||||||..|.
BL02888___yhd 1254 AGCGGGGAAAGGCTT-TTTTATCGTGTGGTTTTATCTTCTTCGTTTCCTT 1302
BSNT_01631___ 1300 GTGCCGCTTGCCATTATTATCGTGTTCTTAAATTTAATCGGAATTTTATC 1349
||.||||||||.|||.|..|.||.||.|||||||||||||||.|.||.||
BL02888___yhd 1303 GTTCCGCTTGCGATTGTACTTGTTTTTTTAAATTTAATCGGAGTGTTTTC 1352
BSNT_01631___ 1350 ATTTTAA 1356
|||||||
BL02888___yhd 1353 ATTTTAA 1359
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