Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01651 and BL02878

See Amino acid alignment / Visit BSNT_01651 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_01651.1.5803.seq
#    -bsequence dna-align/BL02878___yhdX.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01651-BL02878___yhdX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01651-BL02878___yhdX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01651
# 2: BL02878___yhdX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 151
# Identity:      84/151 (55.6%)
# Similarity:    84/151 (55.6%)
# Gaps:          50/151 (33.1%)
# Score: 318.5
# 
#
#=======================================

BSNT_01651         1 ATGATCCTTTATAATAGCAAAAAAGGAGGCGAGATCATGGGAAAAGGGAG     50
                                                         |||||.||||||||
BL02878___yhd      1 ------------------------------------ATGGGTAAAGGGAG     14

BSNT_01651        51 AATCAGAGTGGAGGAAAGAATTAAAGCCGAAACGGATGCTGAAATGCAAA    100
                     |||.|.||||||.|||.|.|||||...||||||.||||||||||||...|
BL02878___yhd     15 AATTAAAGTGGAAGAACGGATTAAGATCGAAACCGATGCTGAAATGTTTA     64

BSNT_01651       101 AAGCAACTCTCCTTGATCAGACACA-------AACGAAAAAAGGTAAGTG    143
                     ||||.||||||||||||||.|||||       || |||.|||  ||.   
BL02878___yhd     65 AAGCGACTCTCCTTGATCAAACACAGTCTCAGAA-GAAGAAA--TAG---    108

BSNT_01651       144 A    144
                      
BL02878___yhd    108 -    108


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.