Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01654 and BL02876

See Amino acid alignment / Visit BSNT_01654 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_01654___yhdZ.1.5803.seq
#    -bsequence dna-align/BL02876___npdA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01654___yhdZ-BL02876___npdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01654___yhdZ-BL02876___npdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01654___yhdZ
# 2: BL02876___npdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity:     523/806 (64.9%)
# Similarity:   523/806 (64.9%)
# Gaps:         118/806 (14.6%)
# Score: 1703.0
# 
#
#=======================================

BSNT_01654___      1 TTGGAAACATTCAAAAGTATTCTACAT-------GAAGCACAGAGAATTG     43
                                              ||       |||||.|.||||.|||
BL02876___npd      1 -------------------------ATGGAGGAAGAAGCCCTGAGATTTG     25

BSNT_01654___     44 ---------------------------TT---GTGCTGACAGGAGCGGGA     63
                                                ||   ||..|||||||.||.||.
BL02876___npd     26 CGGATATGATCGAAAATGCCGAGCGCATTACCGTTTTGACAGGCGCCGGT     75

BSNT_01654___     64 ATGAGCACAGAATCAGGGATTCCAGACTTTCGTTCAGCAGGGGGCATTTG    113
                     ||||||||.||||||||.|||||.||.|||||||||||.||.|||||.||
BL02876___npd     76 ATGAGCACGGAATCAGGCATTCCTGATTTTCGTTCAGCCGGCGGCATATG    125

BSNT_01654___    114 GACGGAAGATGCCTCAAGAATGGAAGCAATGAGCCTTGATTATTTTTTAA    163
                     ||||||||||...||.|||||||||||.|||||||.||||||||....|.
BL02876___npd    126 GACGGAAGATCTGTCGAGAATGGAAGCGATGAGCCGTGATTATTACGAAC    175

BSNT_01654___    164 GTCATCCGCGGCTGTTTTGGCCCAAATTCAAAGAATTGTTCCAGATGAAA    213
                     |..||||.....||||||||||.||.||.|||||..|.||.||.||||||
BL02876___npd    176 GATATCCAAAATTGTTTTGGCCGAAGTTTAAAGAGCTTTTTCAAATGAAA    225

BSNT_01654___    214 ATGAGCGGCAGCTT-TGAACCGAATGAAGGCCATTTGTTTTTAGCTGAGC    262
                     |||| |||.|.||| |...||||||||.||.||..|.|.||||||.||.|
BL02876___npd    226 ATGA-CGGGAACTTATCGGCCGAATGACGGGCACCTTTATTTAGCCGAAC    274

BSNT_01654___    263 TGGAGAAGCAA--GGGAAGCAGGTCAATATTTTTACGCAAAACATTGACG    310
                     |.|||||  ||  ||.|||.|.||||...|.||.|||||.||.||.||||
BL02876___npd    275 TCGAGAA--AAGCGGTAAGGATGTCAGGGTGTTCACGCAGAATATCGACG    322

BSNT_01654___    311 GTCTTCATAAAAAAGCGGGGAGCAGGCATGTATACGAACTGCATGGTTCT    360
                     |.||.|||...||.|||||.|||.|.||||||||.||||||||.|||||.
BL02876___npd    323 GGCTGCATCTTAAGGCGGGAAGCCGCCATGTATATGAACTGCACGGTTCG    372

BSNT_01654___    361 ATCCAGACAGCAGCTTGTCCGGCATGCGGCGCCCGATATGATCTT--CCC    408
                     ||.||.|||||.|||||.||...||||||.||.||.||.|.||||  ||.
BL02876___npd    373 ATTCAAACAGCCGCTTGCCCAAAATGCGGGGCGCGCTACGGTCTTGACCA    422

BSNT_01654___    409 CATT-TGCTGGAGCGGGAGGTGCCGGAGTGCA--CGGCGGCCGGAAA---    452
                     |||| |.|..||   .||.|||||...|||||  ||     ||..||   
BL02876___npd    423 CATTCTTCAAGA---AGAAGTGCCAAGGTGCAATCG-----CGTCAATGG    464

BSNT_01654___    453 CAATGGGGA---CATTTGCGGAACGGTATTAAAAACCGATGTTGTTCTCT    499
                     ||| |||||   ||  ||||||....||||||||||.|||||.||.||.|
BL02876___npd    465 CAA-GGGGAGAGCA--TGCGGATTTATATTAAAAACGGATGTCGTGCTGT    511

BSNT_01654___    500 TTGGCGACGCCG-TCATGCACTTTGACACCCTTTATGAAAAGCTGGATCA    548
                     |.|||||||||| ||| |||.||.|||||.||||.||||...||..|..|
BL02876___npd    512 TCGGCGACGCCGTTCA-GCATTTCGACACGCTTTTTGAAGTCCTCAACGA    560

BSNT_01654___    549 AGCAGATCTTTTATTGGTTATCGGCACGTCTCTCGAAGTGGCTCCGGCTA    598
                     |.|.||.||..|..||||.||||||||.||.|||||||||||.||.|..|
BL02876___npd    561 ATCCGACCTGCTTCTGGTGATCGGCACTTCACTCGAAGTGGCGCCTGTCA    610

BSNT_01654___    599 GATTTGTGCCTGAGGATGCAAGTCTGATTCCCGGCATGAAGAAAGTCATC    648
                     |.|||||.|||||.||.||....|||||.|||||..|||||||||.|||.
BL02876___npd    611 GGTTTGTTCCTGAAGAAGCGCACCTGATCCCCGGTTTGAAGAAAGCCATG    660

BSNT_01654___    649 ATAAACCTTGAACCAACGTATTGCGA-CAGCTTGTTTGACATGGTCATCC    697
                     ||.||.||.||...||||..||.||| || .||.||.|||||.||||||.
BL02876___npd    661 ATCAATCTCGATGAAACGCCTTACGATCA-TTTATTCGACATTGTCATCA    709

BSNT_01654___    698 ATCAAAAAATCGGCGAGTTTGCCCGAAGTTTGGG---------CATAAAA    738
                     ||||||||||||.||||||||        ||.||         |||.|| 
BL02876___npd    710 ATCAAAAAATCGCCGAGTTTG--------TTCGGAAACTCAATCATTAA-    750

BSNT_01654___    739 AAGTGA    744
                           
BL02876___npd    750 ------    750


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01654 and BL02876

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
