Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03039 and BL02874
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_03039___yoxA.1.5803.seq
# -bsequence dna-align/BL02874___yoxA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03039___yoxA-BL02874___yoxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03039___yoxA-BL02874___yoxA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03039___yoxA
# 2: BL02874___yoxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1178
# Identity: 577/1178 (49.0%)
# Similarity: 577/1178 (49.0%)
# Gaps: 397/1178 (33.7%)
# Score: 1161.0
#
#
#=======================================
BSNT_03039___ 1 ATGGCAAACTTTATTGAAAAAATGACTTATTTGGGAACACCGGCCATCAA 50
|||.||| .|||.|..||..||
BL02874___yox 1 ---------------------ATGTCTT--------GCACTGTTCAGAAA 21
BSNT_03039___ 51 AGC-------------GGGCAACGA-ACATCTAGAA----ATGATT---- 78
||| .||.|.||| ||...|.||| ||||||
BL02874___yox 22 AGCCGGTTTTTACATGAGGAAGCGATACGGTTTGAAAATGATGATTTAGA 71
BSNT_03039___ 79 -------GTTGTCCCTGAGTGGGGGAGCAACGTCATTTC--TCTCGTGGA 119
.||||.||.|.||||||.|||||..|.||||| |...||||
BL02874___yox 72 GGCAGTACTTGTGCCCGGGTGGGGAAGCAATTTGATTTCATTGAGGTGG- 120
BSNT_03039___ 120 CAAAACAACAAATGTCCAGC-------TTTTGCGTGAA----CCGGAAAC 158
|.|.|..|| .|||| .|||| ||.|||||
BL02874___yox 121 -----------AAGGCGGGCGGTTTGAATTTG-TTGAAAACGCCTGAAAC 158
BSNT_03039___ 159 A---GCAGAAAGTTTTCACGACACACCAA--CATTGTATGGCATTC-CAA 202
| |.|||| |.|.||| |.|| |.||.| .|||| .||
BL02874___yox 159 AAAGGAAGAA---TATGACG-----CGAATCCGTTTT----TATTCGGAA 196
BSNT_03039___ 203 T-CCTGTTC-----CCGCCTAACCGCATAAGTGACGGTACATT--CAGTT 244
| ||||||| ||.||.|||||.||...|.||||.|.||| ||..|
BL02874___yox 197 TCCCTGTTCTTTTTCCTCCCAACCGGATCGATCACGGGAGATTTACATAT 246
BSNT_03039___ 245 TCCGGGGCAGAACGTATCATTTTGAT----ATCAACGAGAAG--GAT--A 286
.| |||.|||||.||..| |.| |||||.||.||| |.| |
BL02874___yox 247 GC--GGGAAGAACATACGA----GCTGCCGATCAATGAAAAGCCGCTCGA 290
BSNT_03039___ 287 AACACAACCATCTTCACGGGTTTCTTTACCATGAAAAGTGG--------- 327
| |||||.||.|||||.|||||||||.||.||||||||
BL02874___yox 291 A----AACCACCTGCACGGATTTCTTTACGATAAAAAGTGGACGGTAAAA 336
BSNT_03039___ 328 --AATG----------------------TCGTGACCACGAAGC---AAAC 350
|||| |||||...||||.|| |..|
BL02874___yox 337 AAAATGGAGGCAACAGAAGAGCGGATCATCGTGCAGACGATGCTGGACTC 386
BSNT_03039___ 351 TGATGAAGAAGTGATTGTTGAAACAGAAATTGATCTTTCTGAGCTTCCCC 400
|||||| |.||....|.|.| ||||.||||||.| ||..|.|
BL02874___yox 387 TGATGA-----TCATCCGGGCATC--AAATCGATCTTCC----CTCACTC 425
BSNT_03039___ 401 ATGTGCAGAAGCAATTTCCTCATCATGCCGTCGTTCGGATGACATACACA 450
.| |||| ||||| || ||.||.||||||
BL02874___yox 426 TT------------TTTC--CATCA--CC---------ATCACCTACACA 450
BSNT_03039___ 451 ATCAAGGAGAATACCCTATTTAAA--CATGCGACGGTCATGAACAAAGGA 498
.| ||.||.|.|.|.|.|..||| .|||||.|||...|.|||...||.
BL02874___yox 451 TT--AGAAGGACAGCATCTGAAAATTGATGCGTCGGCTGTCAACCGCGGT 498
BSNT_03039___ 499 AAGGAAGCGTTTCC-------TTGGGGAATTGGTTATCATACTACATTTA 541
.|.||..||.|.|| |||||| |||||.|| |
BL02874___yox 499 CAAGATCCGATGCCGATCGGATTGGGG-------TATCACAC-------A 534
BSNT_03039___ 542 TATTTCC---------------------GGCAGAAAG--------CTCGT 562
|.||||| ||.|.|||| ||..|
BL02874___yox 535 TCTTTCCGCTATCCTTTAAACGAATCAGGGGATAAAGAAAAGTGCCTGTT 584
BSNT_03039___ 563 TATTCTCCCTGACAGCAGATC--AGCAATGGGAGTTGGATGAACGCCTGC 610
||.|||.||||.| || ||||.|||..|.||...||.|||.|||
BL02874___yox 585 TACTCTTCCTGCC------TCAAAGCATTGGACGCTGACAGACCGCATGC 628
BSNT_03039___ 611 TGCCGAC---CGGGAAACTGATGGGTGTACCGAATAAAGAAGCTTT---- 653
||||||| ||.|.|.| ||||| |.|||.|..||
BL02874___yox 629 TGCCGACTGGCGAGTATC----GGGTG--------ACAGAGGAGTTCAAA 666
BSNT_03039___ 654 GCATGAAGGAATGGATTTGCGCCA-------CAAGCAGCTGGATGATGTC 696
||..||| .||||| || .||| |||.|||||
BL02874___yox 667 GCGGGAA-AAATGG--------CAGCGGGTGAAAG--GCTTGATGA---- 701
BSNT_03039___ 697 TTTTTATCTT-----CTTATCAGAAGAGGGGCGGAGAA--AACCAG---- 735
|||.|| ||.|.| |||| |..|||| ||.|||
BL02874___yox 702 ----TATATTGGCGGCTGAGC--AAGA----CCAAGAAGGAAACAGCACC 741
BSNT_03039___ 736 GCAGTCATT--------TATCATCAGCATGCACATATCAGCATTATTTAT 777
||.|||||| ..||..|.||||.|.|.|| .|| |||
BL02874___yox 742 GCCGTCATTGCGGACAGCCTCGCCGGCATTCGCGTA--CGC------TAT 783
BSNT_03039___ 778 -AAGGCAGATGAACAGTTTAAACATTGGGTTGTATACAATGCGGACGGAA 826
||.|| ||.|..||.|||||.||.||||||||.|..| ||||.|
BL02874___yox 784 CAATGC-GACGGCCATTTTAAGCACTGGGTTGTGTTTA------ACGGTA 826
BSNT_03039___ 827 ------AACAAG-------GGTATTTATGCCCTGAACCTTACACATGGGT 863
|.||.| |.|.|.||| |||.||.|||||.|||.|
BL02874___yox 827 CATCTGATCAGGATGATCTGCTTTGTAT----TGAGCCATACACTTGGAT 872
BSNT_03039___ 864 GACAAACGCAGTGAATCTTGATTTACCTTC------GTCACTCACTGGTT 907
|||.||.|||..||| |.||| |||||| || .|.||.||.|
BL02874___yox 873 GACGAATGCACCGAA-CGTGA---ACCTTCCGAAGAGT--GTGACCGGAT 916
BSNT_03039___ 908 TTCAAGTGCTGGAGCCGGGAGAAGAAACGACAGCTAA--AAGCAGTATCA 955
|||..|...|||.||||...|||| ||||.| |.|| |.|.||
BL02874___yox 917 TTCGGGATTTGGGGCCGCAGGAAG-------AGCTGACGATGC-GAAGCA 958
BSNT_03039___ 956 CCATTGA-----ACTGAATCATCAATAG 978
..||||| .|.|||| ||.|
BL02874___yox 959 AAATTGAGGTAGGCGGAAT-ATAA---- 981
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