Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01624 and BL02857

See Amino acid alignment / Visit BSNT_01624 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence dna-align/BSNT_01624___citR.1.5803.seq
#    -bsequence dna-align/BL02857___citR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01624___citR-BL02857___citR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01624___citR-BL02857___citR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01624___citR
# 2: BL02857___citR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 927
# Identity:     615/927 (66.3%)
# Similarity:   615/927 (66.3%)
# Gaps:          99/927 (10.7%)
# Score: 1917.0
# 
#
#=======================================

BSNT_01624___      1 ATGGATTTCAAATGGCTTCACACCTTTGTGACCGCTGCAAAATATGAGAA     50
                     ||||||||.|||||||||||.||||||||.||.||.||||||||.||.||
BL02857___cit      1 ATGGATTTTAAATGGCTTCATACCTTTGTCACTGCCGCAAAATACGAAAA     50

BSNT_01624___     51 CTTCCGAAAAACGGCGGAAACGCTTTTCTTA--TCTCAGCCTACTGTGAC     98
                     .|||.||||.||||||||||| |||.| |||  ||||||||.||.||.||
BL02857___cit     51 TTTCAGAAAGACGGCGGAAAC-CTTAT-TTATTTCTCAGCCGACCGTCAC     98

BSNT_01624___     99 CGTACATATCAAGCAATTAGAAAAAGAAATCAGCTGCAAGCTGTTCGAAC    148
                     |||.||.||.||.|...|.|||.|||||.||.|.|||.||||||||...|
BL02857___cit     99 CGTCCAAATTAAACTGCTTGAAGAAGAACTCGGGTGCCAGCTGTTCACCC    148

BSNT_01624___    149 GTAAAGGCAGGCAA--ATCCAGCTGACTGATGAAGGCAGGGCGTATTTGC    196
                     |.|||||.||  ||  ||.||..|.||..|.|||||..||||.||..|.|
BL02857___cit    149 GCAAAGGAAG--AAGCATTCATTTAACGAAAGAAGGACGGGCTTACCTTC    196

BSNT_01624___    197 CGTATGCGCTCAGGCTTCTTGATGATTATGAAAACAGCATGGCAGAGCTT    246
                     |.|.|||.||..|.||..|.||.||.||||||...|||||||||||||||
BL02857___cit    197 CTTTTGCCCTTCGCCTGTTGGAAGACTATGAATCGAGCATGGCAGAGCTT    246

BSNT_01624___    247 CACAGAGTGAGACAAGGCTACTCTCAAACCTTACAGCTCGCGGTTTCTCC    296
                     ||||||.|.||||||||||||||.||.||.||..|..|.||||||||.||
BL02857___cit    247 CACAGAATCAGACAAGGCTACTCACAGACATTGAACTTAGCGGTTTCGCC    296

BSNT_01624___    297 GCTTATTGCAGATACTGTGCTTCCTTCTGTCATGAAACGGTACACAGCAA    346
                     ||||||.||.|||||..|.||.||.|.|||..|.|||...||||||||..
BL02857___cit    297 GCTTATCGCCGATACGATTCTCCCATTTGTATTAAAAAAATACACAGCGC    346

BSNT_01624___    347 T------GAATACGGA-AACAGAAATGGCGGTTACGATTTTCGAATCAGC    389
                     |      ||||.|||| |.||.|       ||.|.|||...|||||||||
BL02857___cit    347 TGCATCCGAATTCGGAGATCAAA-------GTAAAGATCGCCGAATCAGC    389

BSNT_01624___    390 GGAAATCGCGTCACTGATTAAAGCCGGGGAAGCAGATATCGGACTAAGCT    439
                     .||||||||..|.||||||..|||.||..|.|||||||||||||||||||
BL02857___cit    390 TGAAATCGCTCCCCTGATTTCAGCTGGCCATGCAGATATCGGACTAAGCT    439

BSNT_01624___    440 GTTTAAAGGTACAATCTTCTTCTTTAAGCTGCCACTGCT------TATAC    483
                     |.|||||.||.|||||.||     .||.||| .||||||      |.|||
BL02857___cit    440 GCTTAAACGTGCAATCGTC-----AAACCTG-AACTGCTATTCCATGTAC    483

BSNT_01624___    484 AAAGACCCTGTCGTCCTTGTTGCCCCGCCCGATAA-----GCGTTTCATA    528
                     |..||.||.||..|..|.||||||||.|   ||.|     |||.|.||.|
BL02857___cit    484 AGCGATCCCGTGATTTTGGTTGCCCCTC---ATGACGGCCGCGCTGCAGA    530

BSNT_01624___    529 GAAGACAA-------CGAAATTGATGCCAAAGAGGTGCTCGAACAATACC    571
                         ||||       ||  .|.||||.|.|.||..||||.|||.||||..
BL02857___cit    531 ----ACAAGCGCCGCCG--CTCGATGTCGAGGATTTGCTTGAAGAATATT    574

BSNT_01624___    572 TGCTTTTGACCCACAATCATCCTGATTACTGGGACGACTTGCTCCGTCAA    621
                     ||||.||||||||||||||.|||||.||||||||||||.|    |||||.
BL02857___cit    575 TGCTGTTGACCCACAATCACCCTGAATACTGGGACGACCT----CGTCAG    620

BSNT_01624___    622 G----TCAGAATGACATTTCCATTTGTGAGAACAATGAAGGTCACTCAAA    667
                     |    |.||.||.|..|||||.|||||.|||||.|||...||.|..||..
BL02857___cit    621 GCAGCTGAGGATCAAGTTTCCGTTTGTCAGAACGATGCTCGTAAGCCAGG    670

BSNT_01624___    668 CACATATAACGAAACGGTTTA--TCAAGGAAGGACTCGGAGTTTCATTTC    715
                     |.|||||.||||||||.||||  |||  |||||||||||..|.||||||.
BL02857___cit    671 CGCATATTACGAAACGATTTATTTCA--GAAGGACTCGGTATATCATTTT    718

BSNT_01624___    716 TGCCTTTATCTACAGTAAAGCG--------TGAGTTAGCAG--AGA--AA    753
                     ||||..|.||.||.||   |||        |||  |.|.||  |||  ||
BL02857___cit    719 TGCCGCTGTCGACTGT---GCGCCGCGAGCTGA--TGGAAGGAAGATTAA    763

BSNT_01624___    754 CAGATG----ATCAGAATTCCTTATCAGTCTGTACAGCTGCCCTATGCAG    799
                     .|||.|    .|..||.|||.|.|           ||||.|||..|||||
BL02857___cit    764 TAGAGGTGCCGTGCGATTTCATGA-----------AGCTTCCCGTTGCAG    802

BSNT_01624___    800 GCGCTTACGCGATTGCCCTTTATGAAAATAAGAAAGAAAAAAAATTCTTG    849
                     |.|..||.||||||...||..|.||.|||.||||.|...|..|.||.|||
BL02857___cit    803 GGGGATATGCGATTAGTCTGAAAGATAATGAGAAGGTCGAGCACTTTTTG    852

BSNT_01624___    850 GATTTTTTATCACATTTTCATTTTTAG    876
                     |..||||||.|..|.||.|.|||.||.
BL02857___cit    853 GCGTTTTTAGCCGAGTTCCGTTTCTAA    879


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