Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00892 and BL02855
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00892___ydeE.1.5803.seq
# -bsequence dna-align/BL02855___ydeE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00892___ydeE-BL02855___ydeE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00892___ydeE-BL02855___ydeE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00892___ydeE
# 2: BL02855___ydeE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity: 660/912 (72.4%)
# Similarity: 660/912 (72.4%)
# Gaps: 51/912 ( 5.6%)
# Score: 2351.5
#
#
#=======================================
BSNT_00892___ 1 ATGGATTTGCTTAAAAGTATGAAT------AGGGCGTTAAAGTATATTGA 44
|||||||||||.||.|..|||||| |.||| ||||||.||
BL02855___yde 1 ATGGATTTGCTGAAGAACATGAATCAAGCCATGGC------GTATATCGA 44
BSNT_00892___ 45 AGAAAACCTCACTAACGATATTGATTTTCAAGAGGCAGCAAAGCTTGCTT 94
||||.||||.||..||..|||.||.||||||..||..||.||||||.|||
BL02855___yde 45 AGAACACCTGACGGACAGTATCGACTTTCAAACGGTTGCGAAGCTTTCTT 94
BSNT_00892___ 95 TCTGCTCTGAATATCATTTTAAAAGGATGTTTTCCTTCCTTGCAGGTATT 144
.|||||||||||||||||||||||||||||||||.||.|||||.||..||
BL02855___yde 95 ACTGCTCTGAATATCATTTTAAAAGGATGTTTTCTTTTCTTGCCGGGGTT 144
BSNT_00892___ 145 TCATTATCGGAATATATTCGTCGCAGACGTCTTACTCTTGCAGCTTTTGA 194
||..|.||.|||||.||.||.|||||.||.|||||.||||||||.|||||
BL02855___yde 145 TCGCTGTCCGAATACATCCGCCGCAGGCGGCTTACCCTTGCAGCGTTTGA 194
BSNT_00892___ 195 ACTGAAAGACAGCAATGTAAAAGTGATTGATATTGCAATAAAGTACGGTT 244
||||||..|||..||...||||||||||||||||||..|.||.|||||.|
BL02855___yde 195 ACTGAAGAACACAAAAAGAAAAGTGATTGATATTGCGGTGAAATACGGCT 244
BSNT_00892___ 245 ATAACTCACCTGATTCTTTTGCACGGGCATTCCAAAATTTACATGGCATA 294
||.||||.||.|||.|||||.|.||.|||||.|||||..|.||.|||||.
BL02855___yde 245 ATCACTCGCCGGATGCTTTTACGCGCGCATTTCAAAAGCTGCACGGCATT 294
BSNT_00892___ 295 AACCCATCAAAAGCCAGACTTAATGGC--CATTCCCTTAAAGCTTATCCA 342
|..||..||.|.|||||||...||..| || |.||.|||||.|||||.
BL02855___yde 295 ACGCCGACAGAGGCCAGACACGATATCAGCA--CACTGAAAGCATATCCT 342
BSNT_00892___ 343 CGAATGACCTTCCAGCTAACAATTAAAGGAGGAAATGAAATGAACTACCG 392
|..||||||||||||.|||||||||.|||||||||.||||||||||||||
BL02855___yde 343 CCGATGACCTTCCAGTTAACAATTAGAGGAGGAAACGAAATGAACTACCG 392
BSNT_00892___ 393 TATTGAAGAAAAAGAGGCATTTCGCATCGTTGGCATTAAAAAAAGAGTTC 442
|||||.||||||..|||||||.||.|||||.||.||.|||||||||||.|
BL02855___yde 393 TATTGTAGAAAAGAAGGCATTCCGGATCGTCGGAATCAAAAAAAGAGTCC 442
BSNT_00892___ 443 CTATTATTTTTAAAGGGATTAATCCGGAGATTGCATCTATGTGGGAAAGT 492
||.|..|.|||.|.||.||.||||||||.||.||.||.||||||.|||.|
BL02855___yde 443 CTGTCGTCTTTCACGGAATCAATCCGGATATCGCCTCGATGTGGAAAACT 492
BSNT_00892___ 493 TTAGA----TGAAAA-AGCAATAAATAAACTAAAAGAGCTTTCTAATGTA 537
||| | |||||| |.|.||.||| ||||.||||||||.|||||.
BL02855___yde 493 TTA-AGCAGTGAAAACATCGATGAAT----TAAAGGAGCTTTCAAATGTG 537
BSNT_00892___ 538 GCACCATCAGGACTCATTAGTGCATCCACCAATTTTTCTGAAGGTCGGAC 587
|.|||....|||||.|||...|||||..|.||.||.||.|||||..|||.
BL02855___yde 538 GAACCGCTTGGACTGATTCAAGCATCAGCGAACTTCTCCGAAGGCAGGAT 587
BSNT_00892___ 588 TGAGGAAAAAGGAGAGCTCGATCACTATATTGGCGCAGCCACAACGAAAC 637
.||.||..|.|||||.||.||.||.|||||.||..||||.|||||||||.
BL02855___yde 588 GGAAGAGCAGGGAGAACTTGACCATTATATCGGTACAGCGACAACGAAAG 637
BSNT_00892___ 638 AGTGTCCAGA-TAATTTCTCACGGCTTGAAGTTCCTGCCTTAACGTGGGC 686
|.|||||.|| .|||.| ..||.||||||||||||.||||..||.|||||
BL02855___yde 638 AATGTCCGGACCAATAT-GAACAGCTTGAAGTTCCGGCCTCGACATGGGC 686
BSNT_00892___ 687 TGTATTCGAATCAATCGGACCATTTCCGGATACACTGCAAGAAGTATGGG 736
|||.||.|||.|...|||.||.||||||||.||.||.|||.|.||.||||
BL02855___yde 687 TGTCTTTGAAGCGGCCGGCCCGTTTCCGGACACCCTTCAAAATGTCTGGG 736
BSNT_00892___ 737 GACGCATTTATTCCGAATGGTTTCCATCGTCAAATTACGAACAAATAGAA 786
|.|||||||||.|.||||||||.||.||.|||.||||.||.||||...||
BL02855___yde 737 GGCGCATTTATGCTGAATGGTTCCCGTCTTCACATTATGAGCAAACGAAA 786
BSNT_00892___ 787 GGTCCAGAAATATTGTGGAATGAGCATAAGGATGTAACATCACCATCTTT 836
||.||.|||||..|.||||||.||.||.|.|||.|.|..||.|||.|.||
BL02855___yde 787 GGGCCGGAAATCCTCTGGAATCAGGATCAAGATATCAGCTCCCCAACGTT 836
BSNT_00892___ 837 TAAAAGTGAAATTTGGATACCAATTACAAAAAAG------------GAA- 873
||||||.|||||.||||||||..|| |||||||| |||
BL02855___yde 837 TAAAAGCGAAATATGGATACCGGTT-CAAAAAAGAACGGCATGTAAGAAC 885
BSNT_00892___ 874 TACGTTTTTTGA 885
||.
BL02855___yde 886 TAA--------- 888
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