Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01633 and BL02854
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01633___yhdI.1.5803.seq
# -bsequence dna-align/BL02854___ydeL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01633___yhdI-BL02854___ydeL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01633___yhdI-BL02854___ydeL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01633___yhdI
# 2: BL02854___ydeL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1624
# Identity: 903/1624 (55.6%)
# Similarity: 903/1624 (55.6%)
# Gaps: 425/1624 (26.2%)
# Score: 2204.0
#
#
#=======================================
BSNT_01633___ 1 ATGGATATTACGCCGTTTCTTGATAAAA----AG----AGCAAAACACCG 42
||||||||.||.||.||| |.||| || |||.| .|||
BL02854___yde 1 ATGGATATAACCCCTTTT-----TTAAACCGCAGCGGCAGCGA---GCCG 42
BSNT_01633___ 43 CTGTATGAACAGCTTTATACCTTTTTTAAACAAGAA--ATTTCACATGCG 90
||.|||.|.|||||.||.||.|||||.|||| |.| ||| |||.||
BL02854___yde 43 CTTTATCAGCAGCTGTACACGTTTTTCAAAC--GCAGCATT---CATTCG 87
BSNT_01633___ 91 CGAATCACAAAG---GGAACAAGACTTCCGTCAAAACGCAGGCTCTCCA- 136
.||..||.|||| |||||||..|||||.||.|||||.|.|||.||||
BL02854___yde 88 GGACACATAAAGCCTGGAACAAAGCTTCCCTCCAAACGAATGCTTTCCAA 137
BSNT_01633___ 137 --GCTTGCTCGATGTCAGCACGGCAACTATAGAACGAGCTTATGAGCAAT 184
.|| |..||||||||..|.|||||.||||||..||.|||||.||..
BL02854___yde 138 ACACT---TAAATGTCAGCCTGACAACTGTAGAACACGCGTATGAACAGC 184
BSNT_01633___ 185 TAACTGCTGAGGGCTATGTCAAAAGCAAGCC--GAAAATCGGCTGGTTCG 232
|..||||.||.||.|||.|....|||||||| ||||| ||||||||.|
BL02854___yde 185 TGGCTGCAGAAGGATATTTGCTCAGCAAGCCTAGAAAA--GGCTGGTTTG 232
BSNT_01633___ 233 CGGCGGAAGTAGAACCAGGA----TTCCCGACAG-------CTCCTGACC 271
||||.||||..|| |||| ||.| |||| |||||..||
BL02854___yde 233 CGGCTGAAGCGGA---AGGAGACTTTGC--ACAGACTGCGCCTCCTCCCC 277
BSNT_01633___ 272 ATTTTCAGCAGTCTG------TACAGCCGGGATTACATGAAAAGAACGC- 314
||| .|.|.|.||.|..||||||.|.|...||
BL02854___yde 278 ------------CTGCCGAAAAAGAACTGGAAGAACATGAGACGGCGGCT 315
BSNT_01633___ 315 -ACCTGCTATTGACTTCCATCAGGGCAGCGTTGATC---CGAC----CCT 356
||.|| ||.||.||.||.||.|||..|||.||.| ||.| |||
BL02854___yde 316 AACATG--ATCGATTTTCACCACGGCCACGTAGACCTCGCGTCATTTCCT 363
BSNT_01633___ 357 CTTTCCCTTTAACGCATGGAGAAAAA-GCATAGTAAAAAGTCTTGAGCGC 405
.|||||| .|||||.||||| || |.|..||||...||| |.
BL02854___yde 364 GTTTCCC-------AATGGAAAAAAACGC-TCGCCAAAACCGTTG---GT 402
BSNT_01633___ 406 TATTCCGGAT------TGTTTCACACCTCTGGCGACCCTCAAG-----GA 444
.|.||.||.| |.|||||.| |||.|||.|..| ||
BL02854___yde 403 GAATCAGGGTACGACCTTTTTCAAA------GCGGCCCGCCGGCCGGAGA 446
BSNT_01633___ 445 GAATACGAACT-CAGACACATGATTGCCCGATT--CGTCAGGCTGTCTCG 491
.|.|.|| || |.|| |.||||||| ||.|| |.|||
BL02854___yde 447 CATTCCG--CTGCGGA-AAATGATTG--CGGTTTACCTCA---------- 481
BSNT_01633___ 492 GGGAGTAAATTGCGAG--------------CCCGGCCAGATTATCATCGG 527
||| |||.|||.| ||||..||.||.||||||||
BL02854___yde 482 --GAG--AATCGCGCGGCGTGGTCTGTTCCCCCGAGCAAATCATCATCGG 527
BSNT_01633___ 528 CGCAGGAACCACCGTGCTT--CTGCAAATTCTTTGCC-----TTTCGCTA 570
.||.||.| ||||| |.|| |||||..|.||.|||| |||| |||
BL02854___yde 528 AGCCGGCA-CACCG-GTTTTGCTGCAGTTGCTGTGCCATCTGTTTC-CTA 574
BSNT_01633___ 571 AAGCCAGGTACAAAAATCGGTTTTGAAGAACCAGGCTTTCACCGTTCAAG 620
| |||.||||...||||.||||||.|.||.||.|||||.||.||||.
BL02854___yde 575 A----AGGCACAACCGTCGGATTTGAAAATCCCGGATTTCATCGCTCAAA 620
BSNT_01633___ 621 AAGGATGT-TTGAAGCAAA---------TCACATGGATGTCACTCCGATT 660
|| ..|| .||| ||| ||| ||||...|||.||
BL02854___yde 621 AA--CAGTCCTGA---AAACCGGCGGCTTCA-----ATGTGGTTCCAAT- 659
BSNT_01633___ 661 TGTTCTGATGCAGAAGGCG-----TCC-TGCCGGA---TGAGCTCTACCG 701
..|.|.||..|||.||| ||| |||.||| |||.|..||
BL02854___yde 660 --ACCGGTTGACGAAAGCGGGATTTCCGTGCAGGATCTTGAACAATA--- 704
BSNT_01633___ 702 TCAGAATCCTTATCTCATGTATACGACTCCTTCGCATCAGTTTCCGATTG 751
|||| ||..|.|||...||.||.|||||.||.||.|||||||||.|.|
BL02854___yde 705 TCAG---CCGCAGCTCGCATACACCACTCCGTCCCACCAGTTTCCGCTCG 751
BSNT_01633___ 752 GGACCATTATGACGATTACCCGCAGACAGGAGCTGCTGGCATGGGCGGCA 801
|.|..||.|||.||.|...||||||.|.|.||.||||.|..|||||.|||
BL02854___yde 752 GAATGATCATGCCGGTCGGCCGCAGGCTGCAGTTGCTTGACTGGGCAGCA 801
BSNT_01633___ 802 GAAAC---AAATTCAT-TCATTATAGAAGATGATTACGATGGAGAATTTC 847
|..|| |..|| || ||||| |||||.|||||.||.||.|||||.|
BL02854___yde 802 GCGACCGGAGCTT-ATATCATT---GAAGACGATTATGACGGGGAATTCC 847
BSNT_01633___ 848 GCTACAGC-GGCCATCCCATTCCGTCTTTACAGGGTCTTGATCCGAATGG 896
|||| .|| ||.||.||.|||||.||..|.||.||.|||||.|.|||.|.
BL02854___yde 848 GCTA-TGCGGGACAGCCGATTCCTTCCCTGCAAGGGCTTGACCGGAACGA 896
BSNT_01633___ 897 CAGAGTCATATATCTGGGCACTTTTTCAAAGTCACTTCTGCCTTCCTTGC 946
|.|.|||||.|||.|.||.|||||||||||.||.||..|.||.|||.|..
BL02854___yde 897 CCGGGTCATCTATTTAGGGACTTTTTCAAAATCGCTGATTCCCTCCCTCA 946
BSNT_01633___ 947 GGCTCAGCTTCATGATTGTGCCCCCT--------------GAA---CT-- 977
||.||||||..|||.||.| ||||| ||| ||
BL02854___yde 947 GGATCAGCTATATGGTTCT--CCCCTTTCCGCTCGTCAAAGAAGGGCTTA 994
BSNT_01633___ 978 -CATGGAACCGATCCAAAACAATGCTCAGTTAATGAAGCAGACCGTTTCT 1026
||||| .|||| |||.|.||.||.||.|||||.
BL02854___yde 995 ACATGG----CATCC--------------TTATTTAAACAAACGGTTTCC 1026
BSNT_01633___ 1027 GCCCA-------CTCGCAATTGGCACTGGCAGACTTCATCGAAACCGGAG 1069
..||| |..||.||| ||.|| .||.||..|||.|||.|
BL02854___yde 1027 CGCCATGTACAGCATGCCATT-GCTCT------TTTTATGAAAAACGGGG 1069
BSNT_01633___ 1070 AGTGGCAAAAACACATAAATAGAATGAGAAGCTTATACCGAAAA-----A 1114
|.|..||||..|||.|.|||.|||||||||...|.||||||||| |
BL02854___yde 1070 ATTATCAAAGGCACTTGAATCGAATGAGAACACTCTACCGAAAAAAGCGA 1119
BSNT_01633___ 1115 AACACGCTATCCTGTTAGAAGCCAT---TCGCTCTGAACTGGGAAACACC 1161
||.|||| ||| |.||.||||| .|| ||||.|.|| |.
BL02854___yde 1120 AAAACGC--TCC---TTGATGCCATCAAGCG---TGAATTTGG-----CG 1156
BSNT_01633___ 1162 GT----------TGAGATTCTCGGTAAGAACTCGGGGCTTCACATTCTGC 1201
|| |.||| ||..|||||.|.||.||||||||..|.|
BL02854___yde 1157 GTCATGCCGCAGTCAGA-----GGAGAGAACGCCGGTCTTCACATCATCC 1201
BSNT_01633___ 1202 T-----------GCGCCTTTTGTTTCCAGCAAGTGAGG------------ 1228
| ||||| .|.|||||.|
BL02854___yde 1202 TTGAGGTGAAAAGCGCC-----------CCGAGTGAAGAGTGGCTGACCC 1240
BSNT_01633___ 1229 AAGAAGC--------AA-----TACAAG------CAGCCGCAGACCACGG 1259
||.|||| || || ||| |||||.|||.|
BL02854___yde 1241 AAAAAGCGCTGGAAAAAGGGGTTA-AAGTATATCCAGCCTCAGTC----- 1284
BSNT_01633___ 1260 T-GTAACCATCTAT-CCCGTGTCTCCCTCATATAAAGAACAGACGCCTTT 1307
| ||| ||| ||| |.||||.|| |||.|||
BL02854___yde 1285 TCGTA------TATGCCC----CCCCCTGAT-------ACACACG----- 1312
BSNT_01633___ 1308 TGCTTCTGTCTTAATCGGTTATGGCGG--TTTGTCAGAAGAGGACATCAG 1355
|.|||.|..||||.|.|||||| |||.|.|.||.|| ||||
BL02854___yde 1313 -----CGGTCCTCCTCGGGTTTGGCGGACTTTCTGAAAAAAG--CATC-- 1353
BSNT_01633___ 1356 GC--TCGGCATCCAAAAACTGAAAACGGCATGG---------GCACCG-- 1392
|| .|||||||.||||.|||||.||.|||||| |.||.|
BL02854___yde 1354 GCAGACGGCATCAAAAAGCTGAAGACTGCATGGTTTAACGGCGGACAGTC 1403
BSNT_01633___ 1393 ------TTGATATCATCTTATTAA 1410
||||
BL02854___yde 1404 TCAAGATTGA-------------- 1413
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