Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01638 and BL02851
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01638___sigM.1.5803.seq
# -bsequence dna-align/BL02851___sigM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01638___sigM-BL02851___sigM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01638___sigM-BL02851___sigM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01638___sigM
# 2: BL02851___sigM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 497
# Identity: 416/497 (83.7%)
# Similarity: 416/497 (83.7%)
# Gaps: 10/497 ( 2.0%)
# Score: 1753.0
#
#
#=======================================
BSNT_01638___ 1 GTGACGATCGATGAAATTTACCAAATGTACATGAATGATGTTTACAGGTT 50
|||||.|||||.|||||||||||||||||.||||||||||||||||||||
BL02851___sig 1 GTGACTATCGACGAAATTTACCAAATGTATATGAATGATGTTTACAGGTT 50
BSNT_01638___ 51 CCTGCTCTCCATGACAAAAGACAAGCATCTTGCTGAAGACTTGCTGCAGG 100
|||||||||||||||.|||||.||.|||||.||.||.||.|||||.||||
BL02851___sig 51 CCTGCTCTCCATGACGAAAGATAAACATCTAGCAGAGGATTTGCTTCAGG 100
BSNT_01638___ 101 AAACCTTTATGCGGGCATACATACACATTCACTCCTATGATCACAGCAAA 150
|||||||||||.|.||.|||||||||||.||.||.||.||.|||||||||
BL02851___sig 101 AAACCTTTATGAGAGCTTACATACACATCCATTCTTACGACCACAGCAAA 150
BSNT_01638___ 151 GTAAAGCCCTGGCTTTTTCAAGTGGCGCGAAACGCCTTCATTGATTACGT 200
||.|||||.|||||||||||||||||.||.||.||.||.||.||.||.||
BL02851___sig 151 GTGAAGCCATGGCTTTTTCAAGTGGCACGCAATGCGTTTATCGACTATGT 200
BSNT_01638___ 201 CAGAAAGCATAAGAAAGAAGTAACCATTTCTGATGACTTAATCGGAAGCC 250
||||||||||||.||.|||||.||.||||||||.|||.|.|||||||.||
BL02851___sig 201 CAGAAAGCATAAAAAGGAAGTGACGATTTCTGACGACATGATCGGAAACC 250
BSNT_01638___ 251 TCTTTCAAAATGCTGTTCAAAGTCCTGCCCATCAGGTAGAGATAAAGGAA 300
|.||||||||.||.||.|||||.|||||.||.|||||.||.||.||||||
BL02851___sig 251 TGTTTCAAAACGCGGTGCAAAGCCCTGCTCACCAGGTCGAAATCAAGGAA 300
BSNT_01638___ 301 GTGCTGACTGGTTATATGTCCGAGCTCCCCGATAATTATCGGGAGGC-CT 349
|||.|.||....||||||..|.|||||||||||||.||.|||||.|| ||
BL02851___sig 301 GTGTTAACCTTATATATGAACCAGCTCCCCGATAACTACCGGGAAGCGCT 350
BSNT_01638___ 350 TAACGCTATATTATTTAAAAGAGTTAAACTACAAAGAAGCATCCCATA-- 397
| |||||.||.|||||||||||.||.||||||||.|||||.|| |
BL02851___sig 351 T-ACGCTGTACTATTTAAAAGAATTGAACTACAAGGAAGCGTC----AAG 395
BSNT_01638___ 398 --TTATGAATATTTCAGAGGCGAATTTTAAAAGTGTTTTATTTCGTGCCA 445
|.||||||||.||||||||.||||||||||||||||||||||||||||
BL02851___sig 396 CTTGATGAATATCTCAGAGGCTAATTTTAAAAGTGTTTTATTTCGTGCCA 445
BSNT_01638___ 446 GACAGCGGCTGAAAGCACTTTATAATAGAGGTGTTAATGATGAATGA 492
||||||||||||||||||||||.||.|||||||||||.|||||||||
BL02851___sig 446 GACAGCGGCTGAAAGCACTTTACAACAGAGGTGTTAACGATGAATGA 492
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