Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01649 and BL02843
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01649___yhdW.1.5803.seq
# -bsequence dna-align/BL02843___yhdW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01649___yhdW-BL02843___yhdW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01649___yhdW-BL02843___yhdW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01649___yhdW
# 2: BL02843___yhdW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 819
# Identity: 458/819 (55.9%)
# Similarity: 458/819 (55.9%)
# Gaps: 201/819 (24.5%)
# Score: 1231.5
#
#
#=======================================
BSNT_01649___ 1 TTGTACATCATTGCCCATCGCGGAGCATCCGGC-TACGCTCCGGAAAATA 49
|||.|.||.||.||.|||||||||||.| |||| |||||.||.|||||||
BL02843___yhd 1 TTGCATATTATCGCACATCGCGGAGCCT-CGGCTTACGCCCCAGAAAATA 49
BSNT_01649___ 50 CGATTGCCGCATTTGACCTTGCGGTGAAAATGAATGCAGATATGATCGAA 99
||.|||||||.|||||....||||||.|..|....||.|||.|.||||||
BL02843___yhd 50 CGTTTGCCGCTTTTGAAAAAGCGGTGGAGCTCGGGGCTGATTTTATCGAA 99
BSNT_01649___ 100 CTGGATGTCCAGCTTACAAAAGACAGGCAGA-TTGTTGTGATACACGATG 148
||.||..|.|||.|||||||.|| .||.|.| |||..||.||.|||||||
BL02843___yhd 100 CTCGACATACAGATTACAAAGGA-TGGAAAACTTGCCGTCATCCACGATG 148
BSNT_01649___ 149 ACAGGGTTGACCGAACAACAAACGGATCGGGCTTTGTTAAGGATTTTACC 198
|||.|||||||.||||.||.|||||..|.||.||.|||...||.|.|||
BL02843___yhd 149 ACAAGGTTGACAGAACGACGAACGGTACCGGTTTCGTTCGCGAGTATAC- 197
BSNT_01649___ 199 TTGGAGGAAT----TGCAAAAACTCGATGCAGGAAGCTGGTACGGTCCCG 244
||.|||| |..||.|.||.||||||||||||||||.|||.||.|
BL02843___yhd 198 ---GATGAATGAGCTCGAACAGCTGGATGCAGGAAGCTGGTTCGGCCCTG 244
BSNT_01649___ 245 CTTTTCAAGGAGAGCGTATTCCGACCCTGGAAGCGGTGCTCAAGCGCTAC 294
..|.||||||.||....||.||..|.||.|||||.||.||.|.|...||.
BL02843___yhd 245 AATATCAAGGCGAAAAAATCCCTTCACTTGAAGCTGTTCTGAGGAAGTAT 294
BSNT_01649___ 295 CACAAAAAAATCGGCCTTTTAATTGAA----------CTAAAAGGCCATC 334
|||||.||.|..||||||.|.||.||| |.|||| .|||.|
BL02843___yhd 295 CACAATAAGACGGGCCTTCTCATCGAAATCAAGTCGTCCAAAA-CCCAGC 343
BSNT_01649___ 335 CGTCTCAAGTCGGAATTGAAGAAGAGGTGGGACAGCT-AT-------TAG 376
| ||||||.|||.|||.||..|||||.|| || ||.
BL02843___yhd 344 C---------CGGAATCGAAAAAGCGGCCGGACAACTGATCAGCCGGTAT 384
BSNT_01649___ 377 GGCAATTTTCTTTTTCTATCAATAATATTGTTCAATCCTTTCAGTTCCGC 426
||| ..|||.||.||.|..|||||.||.||.|||.|...|.||
BL02843___yhd 385 GGC--------CGTTCAATGAACACAATTGTCCAGTCGTTTGACGCCGGC 426
BSNT_01649___ 427 TCCGTCCAAAGGTTCCGCG-------AGCTTTATCCTTCGATTCCGACAG 469
.||.| .||| ||| |..|.|||||||||||||.|||.|
BL02843___yhd 427 GCCAT---GAGG----GCGTTTCATCACATGTATCCTTCGATTCAGACTG 469
BSNT_01649___ 470 CGGTCATTACAAGGCCCAACTTTGGCATGCTGTCCAG------------- 506
|.||..|.|..|||||.|..|||||..|||||.|..|
BL02843___yhd 470 CCGTTTTGATCAGGCCGAGATTTGGATTGCTGCCGCGCGGCCGGCTGCGG 519
BSNT_01649___ 507 -AAATCAGATGAAGGCCTTCCGC-TCTTTTGCAAACTATGTCAATATAAA 554
|||| ||| ||.|||||..|.||.||||...|.||
BL02843___yhd 520 CAAAT---------------CGCTTCGTTTGCCCAATACGTCAGCCTGAA 554
BSNT_01649___ 555 ATACACACGGCTCAACCGTCTGATGATCGGC-----TCCG-TCCATAAAA 598
| ||| || |||||||.|| ||.| || ||
BL02843___yhd 555 A--------GCT--AC-----GATGATCAGCCCTTTTCTGATC-----AA 584
BSNT_01649___ 599 ATGGCTTAAACA-----TATTT----------GCATGGACTGTCAAC--- 630
||.|.|| .||| .|||| ||.|||||.||||||
BL02843___yhd 585 ATCGATT-CACAGCTGTGATTTGAAGGCGCTGGCTTGGACGGTCAACGGG 633
BSNT_01649___ 631 -----------AA------TCAAAAGACAGCGGCAAAATTACAAGCCATG 663
|| ||||| |||.|.||||| |.|||
BL02843___yhd 634 CAGAAAACGGGAAGCCGCCTCAAA----AGCTGGAAAAT------CGATG 673
BSNT_01649___ 664 GGCGTGGACGGCATCGTTACAGATTACCCGGATTTCATCATAAAGGATGG 713
|| |||.||||.||.|||||||||| ||..|
BL02843___yhd 674 GG----------ATCATTACCGACTACCCGGATT--ATTTT--------- 702
BSNT_01649___ 714 CAAACATGAAAATATATAG 732
|||
BL02843___yhd 703 ------TGA---------- 705
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