Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01655 and BL02841
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_01655___yheN.1.5803.seq
# -bsequence dna-align/BL02841___yheN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01655___yheN-BL02841___yheN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01655___yheN-BL02841___yheN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01655___yheN
# 2: BL02841___yheN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1016
# Identity: 558/1016 (54.9%)
# Similarity: 558/1016 (54.9%)
# Gaps: 271/1016 (26.7%)
# Score: 1365.0
#
#
#=======================================
BSNT_01655___ 1 ATGCGACAA--ACGAGAGGAGAAGCTTCTCCTTCTGCAGTTTCGCTTGCT 48
|||||.||| |..|.| |.||.||.|.||.||||.||.||
BL02841___yhe 1 ATGCGCCAAGTATCAAA--AAAAACTGCCCCATCTGTAGCTT-------- 40
BSNT_01655___ 49 TTTAAATTTGCAAGTTT------AGCAG------TTTT----ATGTGTGC 82
||||| || ||||| |||| .||||| |
BL02841___yhe 41 -----ATTTG-----TTGACGAAAGCAGCGTGCTTTTTCGTGTTGTGT-C 79
BSNT_01655___ 83 TGCTTTTGCT-TATGGTGATTTTGGGTTATTCCAACAGTTC--------- 122
||.||.|.|| ||.| |.||||...||.| |||||.|
BL02841___yhe 80 TGATTCTCCTGTACG-----TGTGGGACCTTTC-ACAGTCCTCTGCCGCT 123
BSNT_01655___ 123 -------AACGAAAGCAAAGGAAGTCAC--TGTCACAACTAACGGACAGC 163
||.||.||| |.|| ||| ||||.|.|
BL02841___yhe 124 ACTGAGAAAAGAGAGC--------TTACGGTGT---------CGGAAAAC 156
BSNT_01655___ 164 TTCGAGATGA-----GAAG--GAAAGCCTTAAGCTGAAAAACG------- 199
..|.|.|||| |||| ||.|||.||..|||.|||||.|
BL02841___yhe 157 AGCCAAATGAGGCATGAAGGAGACAGCGTTCCGCTCAAAAAAGCAACGCA 206
BSNT_01655___ 200 ------ACTCCCCCGATC---TGCTGATAAAACATCTGCAGA-------- 232
||| .|.||||| ||...|.|||||| |||||
BL02841___yhe 207 AGGCGAACT-TCTCGATCACTTGAGCACAAAACA---GCAGATCGAAAAG 252
BSNT_01655___ 233 --CAAAGCAGGACA-------------------TG-GGA----------- 249
| ||||||||.| || |||
BL02841___yhe 253 CGC-AAGCAGGAAAAAGAGAAGCAAAAAGCTGCTGCGGAAAAAAAGAAAG 301
BSNT_01655___ 250 -----------GATAAAACGGTTTACTTAACCTTCGATGACGGCCCGTCA 288
||.|||||||||||.||.||.||.||.||.||.||.|||
BL02841___yhe 302 AAAAATCGAAGGAAAAAACGGTTTATTTGACGTTTGACGATGGGCCTTCA 351
BSNT_01655___ 289 GCCTTTACAACCC----GCTTGCTCGA---TGTA-CTGAAAAGCGCTGAT 330
|||.| ||.|| || ||||..| |.|| |.|||.| ||||
BL02841___yhe 352 GCCGT---AAGCCAAAGGC-TGCTGCAAATTTTATCCGAACA----TGAT 393
BSNT_01655___ 331 GTAAAAGCGACGTTTTTTATGCTGTCACCGCGGATGAA-CGAATTC---A 376
|..||||||||.||.||.|||||...||||...||||| | ||| |
BL02841___yhe 394 GCTAAAGCGACATTCTTCATGCTCGAACCGAACATGAAGC---TTCACAA 440
BSNT_01655___ 377 AGCAG--GCTGTGAA----AAG-AGCAGAAAAGGAAGGCCACGCACTCGG 419
||.|| |.|.|.|| ||| ||||| |||||.|||||.||
BL02841___yhe 441 AGAAGCCGTTCTCAATATGAAGCAGCAG--------GGCCATGCACTTGG 482
BSNT_01655___ 420 TTTACATGGCGTTACCCA----CAATAACAGATTGTTCTATCAAA----- 460
..|.||.||.||.||||| |||.|.|| .||.||| |||
BL02841___yhe 483 ACTTCACGGGGTGACCCATGACCAAAAGCA----ATTTTAT-AAAGGCGC 527
BSNT_01655___ 461 -----CACCTACATCTCCGCTAAAAGAAATGCAGGAGGCGCGTGACACGC 505
|.|||| |||| .||||||.||.||||.|...|.||||
BL02841___yhe 528 CAATTCTCCTA-ATCT--------GGAAATGAAGCAGGCTCAAAAAACGC 568
BSNT_01655___ 506 TGCAGGACATTACAGGTTATAAAACCGCTCTTG-TCAGAACGCCCTACGG 554
||.||...||.||.||...|.||||| |..||| ||||||||||.|||||
BL02841___yhe 569 TGAAGTCTATCACCGGGGTTGAAACC-CATTTGATCAGAACGCCGTACGG 617
BSNT_01655___ 555 AAGCAAGCCGTCACTAACC----CCCTCACAAATCCGCAATCTTGAGAAA 600
||||||.|||||.||.||| |.|..|.||| |.|..|||.|||
BL02841___yhe 618 AAGCAAACCGTCGCTGACCGAAGCGCAGAAAAA-----AGTGCTGAAAAA 662
BSNT_01655___ 601 G-ACGGTTTTGTGTACTGGGATTGGACGATTGACAGCATGGACTGGAAAT 649
| ||||.|||.|.||.|||||.||||..|||||||||.||||||||||||
BL02841___yhe 663 GAACGGATTTATTTATTGGGACTGGAATATTGACAGCCTGGACTGGAAAT 712
BSNT_01655___ 650 ACCG-------AAATTCAAAGTATGTGACGGCCGTGTTAGAGCAGCTTGA 692
||.| |||||| ||..|||..||..|..|.|||| |||
BL02841___yhe 713 ACAGAAGCCAAAAATTC-------GTTCCGGAAGTCATGAACCAGC-TGA 754
BSNT_01655___ 693 AAAT-ATGGAACAAAGCTCTTCAGGC--------CGCCCGAATGTGATTC 733
|.|| .|||| ||||| ||| |..||||..|||||.|
BL02841___yhe 755 ATATCCTGGA--AAAGC------GGCAGACAAAACAGCCGATCGTGATCC 796
BSNT_01655___ 734 TCATGCATGATCTTCCCGCCACCGTAAACGCGCTGCCGGTACTAATCAAT 783
|.|||||.|||.||||..|.||.||..|..|..|||||.||.|..|.|..
BL02841___yhe 797 TGATGCACGATATTCCTTCAACGGTTCAATCATTGCCGTTATTGCTGACA 846
BSNT_01655___ 784 AAATTAAAAGAAAAAGGCTATTCCTTCGGAGTGTTAGAGGACACAATGGT 833
||.||||||.|.|..||.|||||.||.|.|....|.||.||..|.|||..
BL02841___yhe 847 AATTTAAAAAACATGGGGTATTCATTTGCAACACTTGATGAATCCATGAC 896
BSNT_01655___ 834 TCCTGTTCATGAATAA 849
.||.||||||||||||
BL02841___yhe 897 ACCCGTTCATGAATAA 912
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