Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01655 and BL02841

See Amino acid alignment / Visit BSNT_01655 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:08
# Commandline: needle
#    -asequence dna-align/BSNT_01655___yheN.1.5803.seq
#    -bsequence dna-align/BL02841___yheN.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01655___yheN-BL02841___yheN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01655___yheN-BL02841___yheN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01655___yheN
# 2: BL02841___yheN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1016
# Identity:     558/1016 (54.9%)
# Similarity:   558/1016 (54.9%)
# Gaps:         271/1016 (26.7%)
# Score: 1365.0
# 
#
#=======================================

BSNT_01655___      1 ATGCGACAA--ACGAGAGGAGAAGCTTCTCCTTCTGCAGTTTCGCTTGCT     48
                     |||||.|||  |..|.|  |.||.||.|.||.||||.||.||        
BL02841___yhe      1 ATGCGCCAAGTATCAAA--AAAAACTGCCCCATCTGTAGCTT--------     40

BSNT_01655___     49 TTTAAATTTGCAAGTTT------AGCAG------TTTT----ATGTGTGC     82
                          |||||     ||      |||||      ||||    .||||| |
BL02841___yhe     41 -----ATTTG-----TTGACGAAAGCAGCGTGCTTTTTCGTGTTGTGT-C     79

BSNT_01655___     83 TGCTTTTGCT-TATGGTGATTTTGGGTTATTCCAACAGTTC---------    122
                     ||.||.|.|| ||.|     |.||||...||.| |||||.|         
BL02841___yhe     80 TGATTCTCCTGTACG-----TGTGGGACCTTTC-ACAGTCCTCTGCCGCT    123

BSNT_01655___    123 -------AACGAAAGCAAAGGAAGTCAC--TGTCACAACTAACGGACAGC    163
                            ||.||.|||        |.||  |||         ||||.|.|
BL02841___yhe    124 ACTGAGAAAAGAGAGC--------TTACGGTGT---------CGGAAAAC    156

BSNT_01655___    164 TTCGAGATGA-----GAAG--GAAAGCCTTAAGCTGAAAAACG-------    199
                     ..|.|.||||     ||||  ||.|||.||..|||.|||||.|       
BL02841___yhe    157 AGCCAAATGAGGCATGAAGGAGACAGCGTTCCGCTCAAAAAAGCAACGCA    206

BSNT_01655___    200 ------ACTCCCCCGATC---TGCTGATAAAACATCTGCAGA--------    232
                           ||| .|.|||||   ||...|.||||||   |||||        
BL02841___yhe    207 AGGCGAACT-TCTCGATCACTTGAGCACAAAACA---GCAGATCGAAAAG    252

BSNT_01655___    233 --CAAAGCAGGACA-------------------TG-GGA-----------    249
                       | ||||||||.|                   || |||           
BL02841___yhe    253 CGC-AAGCAGGAAAAAGAGAAGCAAAAAGCTGCTGCGGAAAAAAAGAAAG    301

BSNT_01655___    250 -----------GATAAAACGGTTTACTTAACCTTCGATGACGGCCCGTCA    288
                                ||.|||||||||||.||.||.||.||.||.||.||.|||
BL02841___yhe    302 AAAAATCGAAGGAAAAAACGGTTTATTTGACGTTTGACGATGGGCCTTCA    351

BSNT_01655___    289 GCCTTTACAACCC----GCTTGCTCGA---TGTA-CTGAAAAGCGCTGAT    330
                     |||.|   ||.||    || ||||..|   |.|| |.|||.|    ||||
BL02841___yhe    352 GCCGT---AAGCCAAAGGC-TGCTGCAAATTTTATCCGAACA----TGAT    393

BSNT_01655___    331 GTAAAAGCGACGTTTTTTATGCTGTCACCGCGGATGAA-CGAATTC---A    376
                     |..||||||||.||.||.|||||...||||...||||| |   |||   |
BL02841___yhe    394 GCTAAAGCGACATTCTTCATGCTCGAACCGAACATGAAGC---TTCACAA    440

BSNT_01655___    377 AGCAG--GCTGTGAA----AAG-AGCAGAAAAGGAAGGCCACGCACTCGG    419
                     ||.||  |.|.|.||    ||| |||||        |||||.|||||.||
BL02841___yhe    441 AGAAGCCGTTCTCAATATGAAGCAGCAG--------GGCCATGCACTTGG    482

BSNT_01655___    420 TTTACATGGCGTTACCCA----CAATAACAGATTGTTCTATCAAA-----    460
                     ..|.||.||.||.|||||    |||.|.||    .||.||| |||     
BL02841___yhe    483 ACTTCACGGGGTGACCCATGACCAAAAGCA----ATTTTAT-AAAGGCGC    527

BSNT_01655___    461 -----CACCTACATCTCCGCTAAAAGAAATGCAGGAGGCGCGTGACACGC    505
                          |.|||| ||||        .||||||.||.||||.|...|.||||
BL02841___yhe    528 CAATTCTCCTA-ATCT--------GGAAATGAAGCAGGCTCAAAAAACGC    568

BSNT_01655___    506 TGCAGGACATTACAGGTTATAAAACCGCTCTTG-TCAGAACGCCCTACGG    554
                     ||.||...||.||.||...|.||||| |..||| ||||||||||.|||||
BL02841___yhe    569 TGAAGTCTATCACCGGGGTTGAAACC-CATTTGATCAGAACGCCGTACGG    617

BSNT_01655___    555 AAGCAAGCCGTCACTAACC----CCCTCACAAATCCGCAATCTTGAGAAA    600
                     ||||||.|||||.||.|||    |.|..|.|||     |.|..|||.|||
BL02841___yhe    618 AAGCAAACCGTCGCTGACCGAAGCGCAGAAAAA-----AGTGCTGAAAAA    662

BSNT_01655___    601 G-ACGGTTTTGTGTACTGGGATTGGACGATTGACAGCATGGACTGGAAAT    649
                     | ||||.|||.|.||.|||||.||||..|||||||||.||||||||||||
BL02841___yhe    663 GAACGGATTTATTTATTGGGACTGGAATATTGACAGCCTGGACTGGAAAT    712

BSNT_01655___    650 ACCG-------AAATTCAAAGTATGTGACGGCCGTGTTAGAGCAGCTTGA    692
                     ||.|       ||||||       ||..|||..||..|..|.|||| |||
BL02841___yhe    713 ACAGAAGCCAAAAATTC-------GTTCCGGAAGTCATGAACCAGC-TGA    754

BSNT_01655___    693 AAAT-ATGGAACAAAGCTCTTCAGGC--------CGCCCGAATGTGATTC    733
                     |.|| .||||  |||||      |||        |..||||..|||||.|
BL02841___yhe    755 ATATCCTGGA--AAAGC------GGCAGACAAAACAGCCGATCGTGATCC    796

BSNT_01655___    734 TCATGCATGATCTTCCCGCCACCGTAAACGCGCTGCCGGTACTAATCAAT    783
                     |.|||||.|||.||||..|.||.||..|..|..|||||.||.|..|.|..
BL02841___yhe    797 TGATGCACGATATTCCTTCAACGGTTCAATCATTGCCGTTATTGCTGACA    846

BSNT_01655___    784 AAATTAAAAGAAAAAGGCTATTCCTTCGGAGTGTTAGAGGACACAATGGT    833
                     ||.||||||.|.|..||.|||||.||.|.|....|.||.||..|.|||..
BL02841___yhe    847 AATTTAAAAAACATGGGGTATTCATTTGCAACACTTGATGAATCCATGAC    896

BSNT_01655___    834 TCCTGTTCATGAATAA    849
                     .||.||||||||||||
BL02841___yhe    897 ACCCGTTCATGAATAA    912


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