Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00992 and BL02839
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_00992___ydhH.1.5803.seq
# -bsequence dna-align/BL02839___ydhH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00992___ydhH-BL02839___ydhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00992___ydhH-BL02839___ydhH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00992___ydhH
# 2: BL02839___ydhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity: 294/552 (53.3%)
# Similarity: 294/552 (53.3%)
# Gaps: 129/552 (23.4%)
# Score: 663.0
#
#
#=======================================
BSNT_00992___ 1 ATGTCCAGTCATTATA----AATAC------CCTCTCATTTTCACGGCAT 40
||.|.| ||||| ||..|..||||||..||.|
BL02839___ydh 1 ----------ATGAAACAGGAATACAAGCGGCCGGTGCTTTTCATCGCCT 40
BSNT_00992___ 41 TCCTATTAATCGCTTTCTGCTTGATCTTTTTTTC---------CT-ATCA 80
.|||.||.||.||.||.||| |...|||.|||| || |||
BL02839___ydh 41 CCCTTTTCATGGCCTTTTGC--GCCGTTTATTTCGGCGGGAGGCTGATC- 87
BSNT_00992___ 81 CCTGATTCATCATGTTCGTTT-------GGAGTATCCGAATTGGCAGGGA 123
.||| ||| |||.||.||.||.|||.|.||
BL02839___ydh 88 ------------GGTT--TTTATATGGCGGAATACCCAAAATGGAACGG- 122
BSNT_00992___ 124 GAAAGCAAAGATCAG-----AATTGGGAAGCTGTTTTCACAAAAAATGAA 168
||||||..|.| ||||||||.||.||..||| ||||.|| |
BL02839___ydh 123 ----GCAAAGCGCCGACGGAAATTGGGAGGCCGTGATCA-AAAAGAT--A 165
BSNT_00992___ 169 GAT------GCACCGAATGAATACAGCGGCAAACTTTATTGGATCGGTGA 212
||| ||.|.| |.|.||||..|.||.||.||||..||.||
BL02839___ydh 166 GATGGCCGCGCGCTG------TTCGGCGGAGAGCTCTACTGGACAGGCGA 209
BSNT_00992___ 213 ----TACAA-TTGAAACAGACAACACTTATTTGGAATCACTGATTGTAAA 257
..||| .|| |||.|.||.|||||||||..|.||.|.|||||
BL02839___ydh 210 CCGCGGCAAGCTG-----GACGATACATATTTGGAAAAATTGGTCGTAAA 254
BSNT_00992___ 258 AAAAGATGATGAA---GTTCTGCTGAGTTCTAACACGGAAATTCCAATGC 304
....|.||||||| |||.|| |||.|..||||...||.||
BL02839___ydh 255 GTTTGGTGATGAAATCGTTTTG---------AACGCCCAAATCGAAACGC 295
BSNT_00992___ 305 --GT----GACTATTCCGGAGGCACTTTTTCTGATGGAAGCGCAAAAGAA 348
|| ||.||..|.|||||||..||..|.|..|||.|..||||||||
BL02839___ydh 296 CGGTGAAAGATTACGCGGGAGGCAAATTCCCCGGCGGAGGGTCAAAAGAA 345
BSNT_00992___ 349 AAGTCTGTTTCTTTTTTAGAGCGGTTAGATGAACATGAGCTTGAAGGCCA 398
.|.||.|||||||||||.||..||.|.||.|||..|||..|.|..||||.
BL02839___ydh 346 CAATCCGTTTCTTTTTTGGAAGGGCTTGAAGAAGCTGAAATCGCCGGCCG 395
BSNT_00992___ 399 TGATATTACGATTGAAGTGAAATGGAAACAAGGTAATCATTATTCTACGA 448
.||..|.|||.||.||.||.|.||||.|.|.||.||.|| |...|.|.|
BL02839___ydh 396 CGAGGTGACGGTTCAATTGGATTGGAGAGAGGGCAAACA--AGCGTCCCA 443
BSNT_00992___ 449 GTCAG--CTTACGCTCAATGAAAAGACCTTGTTTGATGAAAAGCAGCAAT 496
..||| .|||||||..|| |||||..|.||.| ||
BL02839___ydh 444 TACAGGATTTACGCTTGAT-AAAAGCTCATGGT-----AA---------- 477
BSNT_00992___ 497 AG 498
BL02839___ydh 477 -- 477
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