Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00734 and BL02817

See Amino acid alignment / Visit BSNT_00734 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:22
# Commandline: needle
#    -asequence dna-align/BSNT_00734___ydaD.1.5803.seq
#    -bsequence dna-align/BL02817___ydaD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00734___ydaD-BL02817___ydaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00734___ydaD-BL02817___ydaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00734___ydaD
# 2: BL02817___ydaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 880
# Identity:     670/880 (76.1%)
# Similarity:   670/880 (76.1%)
# Gaps:          29/880 ( 3.3%)
# Score: 2507.0
# 
#
#=======================================

BSNT_00734___      1 ATGGCAAATT------ATC------CAAAAGAACTGCCGGCACAAACTCA     38
                     ||||   |||      |||      ||||.|..|.||||||.||.||.||
BL02817___yda      1 ATGG---ATTTGCGCAATCAGCAGACAAACGGGCAGCCGGCGCAGACGCA     47

BSNT_00734___     39 AAGTCGCCAGCCGGGAATTGAAAGCGAAATGAATCCAAGTCCGGTGTATG     88
                     |...||||||||.||.||.|||||||..||||||||..|||||.|.||||
BL02817___yda     48 AGACCGCCAGCCCGGCATCGAAAGCGTCATGAATCCGCGTCCGATCTATG     97

BSNT_00734___     89 AGTACGAGGATTATAAAGGAGCAGACAAATTAAAAGGAAAAGTAGCTCTT    138
                     ||.|.||..||||.||||||.|.||.|||.|.||||||||.||.||.||.
BL02817___yda     98 AGGATGAAAATTACAAAGGAACGGATAAACTGAAAGGAAAGGTCGCGCTG    147

BSNT_00734___    139 ATTACAGGCGGCGACAGCGGGATCGGACGCGCGGTTTCCGTCGCTTACGC    188
                     ||.|||||.|||||||||||.|||||..|.||.|||.||||.||.||.||
BL02817___yda    148 ATCACAGGAGGCGACAGCGGAATCGGCAGAGCTGTTGCCGTTGCCTATGC    197

BSNT_00734___    189 AAAGGAAGGCGCGGACATCGCCATTGTGTATAAGGATGAGCATGAAGACG    238
                     .||.|||||||||||||||.|.||.||.||...|.||||.||.|||||||
BL02817___yda    198 TAAAGAAGGCGCGGACATCTCGATCGTCTACTTGAATGAACACGAAGACG    247

BSNT_00734___    239 CTGAGGAGACGAAGAAACGTGTTGAACAAGAAGGCGTAAAATGCCTGCTG    288
                     ||.||||||||||....||.||||||.||||.|||||.||||||||||||
BL02817___yda    248 CTCAGGAGACGAAAGCGCGCGTTGAAAAAGAGGGCGTCAAATGCCTGCTG    297

BSNT_00734___    289 ATTGCTGGTGACGT-AGGTGAAGAGGAATTCTGCAATGAAGCGGTTGGAA    337
                     .||.|.||.||.|| ||| ||.||.|..|||||||||||.|||||||...
BL02817___yda    298 CTTCCCGGCGATGTCAGG-GATGAAGCTTTCTGCAATGACGCGGTTGAGC    346

BSNT_00734___    338 AAACGGTCAAGGAACTAGGCGGCCTTGACATCCTTGTCAACAATGCAGGT    387
                     |.|||||.|||||.||.|||.|.|||||.||.||||||||.|||||.|..
BL02817___yda    347 AGACGGTGAAGGAGCTGGGCCGTCTTGATATTCTTGTCAATAATGCGGCC    396

BSNT_00734___    388 GAACAGCATCCGAAGGAAAGCATCAAAGATATTACGAGCGAACAGCTTCA    437
                     |||||||||||.||.||.|||||.|||||.|||.|.||.||||||||   
BL02817___yda    397 GAACAGCATCCTAAAGACAGCATTAAAGAGATTTCCAGTGAACAGCT---    443

BSNT_00734___    438 CCG----CACATTCAAAACAAATTTTTATTCTCAATTTTATTTGACTAAA    483
                      ||    .|||||.|||||||||||.|..|||.|.||.||.||.||.|||
BL02817___yda    444 -CGAGAAAACATTTAAAACAAATTTCTTCTCTTATTTCTACTTTACAAAA    492

BSNT_00734___    484 AAAGCAATTGATTACCTGAAACCGGGCAGCGCCATCATCAATACGACATC    533
                     |||||.||||||||.|||.|.|||||||||||.|||||||||||.|||||
BL02817___yda    493 AAAGCGATTGATTATCTGGAGCCGGGCAGCGCGATCATCAATACAACATC    542

BSNT_00734___    534 CATCAACCCGTACGTAGGGAACCCGACA-CTGATTGATTATACAGCGACA    582
                     .||||||||.|||...||.||.||| || ||||||||.||.||.||.|||
BL02817___yda    543 GATCAACCCTTACCGGGGCAATCCG-CAGCTGATTGACTACACGGCAACA    591

BSNT_00734___    583 AAAGGGGCGATCAATGCCTTTACAAGAACAATGGCGCAGGCGCTTGTCAA    632
                     |||||||||||||||||.||||||.|..|.|||.|.||||||||.|||||
BL02817___yda    592 AAAGGGGCGATCAATGCGTTTACACGGTCGATGTCACAGGCGCTCGTCAA    641

BSNT_00734___    633 AGACGGCATCCGTGTAAATGCAGTCGCGCCGGGTCCAATTTGGACGCCAC    682
                     |||||||||||||||.|||||.||.||.|||||.||.|||||||||||.|
BL02817___yda    642 AGACGGCATCCGTGTCAATGCCGTTGCACCGGGACCGATTTGGACGCCGC    691

BSNT_00734___    683 TAATCCCAGCTACGTTCCCTGAAGAAACAGTTGCTCAATTTGGGCA-AGA    731
                     |.|||||..|.|||||..|.|..||...|||.|| .||.||.||.| |||
BL02817___yda    692 TGATCCCGTCAACGTTTTCAGGGGAGGAAGTGGC-GAAGTTCGGTACAGA    740

BSNT_00734___    732 TACGCCGATGGGCCGTCCTGGACAGCCTGTTGAGCACGTCGGCTGTTATG    781
                     |||.||||||||||||||.||.|||||.||.||.||.||.|||||.||||
BL02817___yda    741 TACACCGATGGGCCGTCCAGGTCAGCCGGTCGACCATGTGGGCTGCTATG    790

BSNT_00734___    782 TGCTTCTGGCATCAGATGAGTCCTCTTACATGACAGGTCAGACCCTGCAT    831
                     |||||.|.|||||.||.||.||.||.||.||||||||.||||||||.||.
BL02817___yda    791 TGCTTTTAGCATCTGACGATTCTTCGTATATGACAGGGCAGACCCTCCAC    840

BSNT_00734___    832 GTCAACGGCGGAAACTTTGTGACGACATAA    861
                     ||||||||||||.|||||.|.|||||||||
BL02817___yda    841 GTCAACGGCGGAGACTTTATCACGACATAA    870


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00734 and BL02817

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
