Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03392 and BL02789
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_03392___yphF.1.5803.seq
# -bsequence dna-align/BL02789.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03392___yphF-BL02789.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03392___yphF-BL02789.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03392___yphF
# 2: BL02789
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity: 495/779 (63.5%)
# Similarity: 495/779 (63.5%)
# Gaps: 106/779 (13.6%)
# Score: 1358.0
#
#
#=======================================
BSNT_03392___ 1 ATG-----GGTAAACTGAAGT-----GCGCAATCATTT-TTG-CGGCAGT 38
||| .|||||| || .|||.|| ||| ||| |.|||.|
BL02789 1 ATGAAAATCGTAAAC----GTTCTGCTCGCTAT--TTTATTGACCGCAAT 44
BSNT_03392___ 39 CGTGTTTTTATCCGGATGTTTATATCC-----AAATGAACG--GAAAAGC 81
|.|| |||..|||.|||||.||.|| ||| |||.| |||||.|
BL02789 45 CATG---TTAAGCGGTTGTTTGTACCCTGAAGAAA-GAAAGGCGAAAAAC 90
BSNT_03392___ 82 AGTGTGCATGCCATTCCTTATCAAGACCAGCT-AAAGCAGGTTCAATCTG 130
||.| || ||..||||..||||||| |||| |.||.||..|.|
BL02789 91 AGCG-------CA--CCGCATCAGCACCAGCTCAAAG-AAGTGCAGGCGG 130
BSNT_03392___ 131 CTGTTGATGAATTTCA-AAAGGCAAATGGAGGGCTGCTTCCCATTCAAAC 179
|.||||||||| |||| ..||||.|..||||||||.||.||.|||.|.||
BL02789 131 CCGTTGATGAA-TTCAGGGAGGCGACGGGAGGGCTTCTGCCGATTAAGAC 179
BSNT_03392___ 180 AAAAGATATGTCGAC--ACCGCTATATCAAAAATATCCGATAGACTTTAA 227
||..|||||| |.| .||..|.|||||||||||.||.||.||.|||||
BL02789 180 AAGGGATATG--GGCGTGCCAATCTATCAAAAATACCCTATCGATTTTAA 227
BSNT_03392___ 228 CCGGTTAGCGCCAAGATACATAGCTGAACCTCCAAGTACGGCATTTGAAA 277
|.||.|..|.||..|.||.||.|||||.||.||..|.||..|.|.|||||
BL02789 228 CAGGCTGTCCCCCCGGTATATGGCTGAGCCGCCGGGCACATCCTATGAAA 277
BSNT_03392___ 278 GCGGGGGAGACTATCAATACGTGCTTGTTGACGTAGAGAACGATCCGACT 327
.|||.|||||.||....|||||.|||||.||.||.||.||..|.|||||.
BL02789 278 ACGGCGGAGAGTACTTGTACGTTCTTGTCGATGTGGAAAAAAAGCCGACG 327
BSNT_03392___ 328 GTTAAATTAATTGATCTAAAGATGGCAGAAAAAATTCGCGATGTGAAA-- 375
||.||..|.||||||.||||.|||.|.||||..||..|.|| ||.|||
BL02789 328 GTCAAGCTCATTGATGTAAAAATGTCGGAAATGATCAGGGA-GTTAAAGC 376
BSNT_03392___ 376 TTGCGCATCCAAATGTATCGTCAGGAGCATCAA-TATCCGCCTTACAAGG 424
|| ||..||.||||||||....|..|||| ||| ||||||||.||.||..
BL02789 377 TT-CGGGTCGAAATGTATAAAGATCAGCA-CAAGTATCCGCCGTATAAAA 424
BSNT_03392___ 425 ATGTGCTATCTCGCG-ATTTATTTACACTCGATGA-GAAGAAGCTTGG-- 470
|.||..|||| |..| |.|||||.|..||.||..| ||| |||||.||
BL02789 425 AAGTCGTATC-CAAGAACTTATTCATGCTTGACCATGAA-AAGCTCGGAC 472
BSNT_03392___ 471 GGATGGAAGCTCTCTTACAGTGACAAGCCCAATCTCAGGGAATTCCTTGC 520
.||..||.||.| ||| |.||.||.||.||..|.||.||.|..||..|||
BL02789 473 TGAAAGAGGCGC-CTT-CTGTCACGAGTCCGCTTTCGGGCACCTCGCTGC 520
BSNT_03392___ 521 CGCTTATGATTGACGGAGACGGAGAAATATATGCTGATTACCGGACTG-- 568
|||||.|..|.||.|.|.|.||.||.||..|.|..|||||||||| ||
BL02789 521 CGCTTCTCGTCGATGAAAAAGGCGACATTAAAGTGGATTACCGGA-TGGA 569
BSNT_03392___ 569 --------AGCTGACTTCTTGCCTCAAAAAAAG--CAAAAAAACGTTTAA 608
|||||| || ||.||| .||||||||| .|||
BL02789 570 TTTGGCCAAGCTGA-----TG------AAGAAGTCGAAAAAAACG-GTAA 607
BSNT_03392___ 609 ACCCGGGAC--TGAAATCCAGGATATGATTTGGGAGGAAACCCCCTTTGT 656
|.||||| | .|||.||||.|||.||||.|||||.||.||.||.||.||
BL02789 608 AGCCGGG-CGAGGAAGTCCAAGATTTGATGTGGGAAGAGACGCCTTTCGT 656
BSNT_03392___ 657 CCCCGCGTTTTCTGTAAAATATACGGTAAATGACAAACAGGAACCTGTTT 706
.||.||||||||.|||||.||.||.||.||||||||||||||||||||||
BL02789 657 TCCGGCGTTTTCGGTAAAGTACACAGTGAATGACAAACAGGAACCTGTTT 706
BSNT_03392___ 707 TTTTAGAAAATGATATGAAAAAGGAATGA 735
||.|.|||.|.
BL02789 707 TTCTCGAATAG------------------ 717
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