Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03383 and BL02784

See Amino acid alignment / Visit BSNT_03383 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:19
# Commandline: needle
#    -asequence dna-align/BSNT_03383___hepS.1.5803.seq
#    -bsequence dna-align/BL02784___hepS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03383___hepS-BL02784___hepS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03383___hepS-BL02784___hepS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03383___hepS
# 2: BL02784___hepS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 843
# Identity:     545/843 (64.7%)
# Similarity:   545/843 (64.7%)
# Gaps:         153/843 (18.1%)
# Score: 1736.0
# 
#
#=======================================

BSNT_03383___      1 TTGCAAGACATCTACGGAACTTTAGCCAATCTGAACACGAAATTAAAACA     50
                     ||||||||||||||||||...|||.|..||.||||.|..||..|.||.||
BL02784___hep      1 TTGCAAGACATCTACGGACAATTATCTTATTTGAAAATCAAGCTGAATCA     50

BSNT_03383___     51 AAAGCTGTCTCATCCTTATTTAGCGAAGCATATTTCTGCGCCGAAAATTG    100
                     ||||||.||.|||||.|||||.|||||||||.|..|||||||||||.|||
BL02784___hep     51 AAAGCTTTCACATCCATATTTGGCGAAGCATCTGACTGCGCCGAAAGTTG    100

BSNT_03383___    101 ATGAGGATAAGCTTCTTCTTTTTCATGCTTTATTTGAAGAAGCTGACATA    150
                     |||||||||||||..|||||||..|.|||.|.|||||.|||.|.||..||
BL02784___hep    101 ATGAGGATAAGCTGTTTCTTTTCTACGCTCTGTTTGAGGAAACGGATTTA    150

BSNT_03383___    151 AAAAACAAC-GACAGAGAAAATTATATTGTAACAGCGATGCTTGTACAAA    199
                     |||.| |.| ||||..||||.|||.||..||||.|||||||||||.||||
BL02784___hep    151 AAAGA-AGCTGACAAGGAAAGTTACATCTTAACGGCGATGCTTGTTCAAA    199

BSNT_03383___    200 GCGCCCTTGATACCCATGATGAAGTGACGACAGCTAGAGTC-ATAAAACG    248
                     ..|||||||||||||||||||||||.|||||.|| ||..|| ||.||||.
BL02784___hep    200 CAGCCCTTGATACCCATGATGAAGTCACGACCGC-AGCTTCAATTAAACA    248

BSNT_03383___    249 AGACGAAAACAAAAACCGCCAATTGACTGTTCTCGCGGGCGATTATTTCA    298
                     .|||||..|.|||||||||||..||||.||..|.||.||.|||||.||||
BL02784___hep    249 GGACGATTATAAAAACCGCCAGCTGACCGTATTGGCCGGTGATTACTTCA    298

BSNT_03383___    299 GCGGGCTGTACTACTCTTTACTATCTGAAATGAAGGATATCTACATGATT    348
                     ||||..||||||||||..|..||||.|..|||||||||||.||.||||||
BL02784___hep    299 GCGGCATGTACTACTCGCTGTTATCGGGTATGAAGGATATTTATATGATT    348

BSNT_03383___    349 CGGACGCTTGCTACAGCCATTAAAGAAATCAACGAACATAAAATTCGTCT    398
                     ||||||||.|||.|.|||||.||||||||.||||||||.|||||..|.||
BL02784___hep    349 CGGACGCTCGCTGCGGCCATCAAAGAAATAAACGAACACAAAATCAGGCT    398

BSNT_03383___    399 GTATGACCGTTCTTTC----AAG-----GAC-----GAAAACGATTTTTT    434
                     .||.||||.|||   |    |||     |||     |||||         
BL02784___hep    399 TTACGACCATTC---CGCAAAAGATGCAGACAGCCTGAAAA---------    436

BSNT_03383___    435 CGAAAGTGTCGGCATCGTTGAATCAG--CTTTATT--CCATCGTGTGGCG    480
                       ||||.|||.||||.||.|||.|.|  |||| ||  |||||   |.||.
BL02784___hep    437 --AAAGCGTCAGCATAGTGGAAGCTGCACTTT-TTCACCATC---TCGCC    480

BSNT_03383___    481 GAACACTTCAGCCTCCCGCGCTGGAAAA-AGCTGTCGAGTGATTTTTTTG    529
                     ||.|||||...|||.||.|.|||||||| |||.| |.|.|||.|||.|||
BL02784___hep    481 GACCACTTTTACCTGCCTCACTGGAAAACAGCCG-CCAATGACTTTCTTG    529

BSNT_03383___    530 TATTTAA-------GCGGCTTATGAACGGAAA-----TGAT-----GCAT    562
                     |.|||||       |||||..|.|||   |||     .|||     ||  
BL02784___hep    530 TCTTTAAAAGGTTTGCGGCCGAAGAA---AAAGCTTCAGATTCCCGGC--    574

BSNT_03383___    563 TTCTGGATGTGATCGGCAGTTTTATACAGCTGGGAAAAA-----CAAAAG    607
                     |.|||||...||||         |||||     ||||.|     |..|||
BL02784___hep    575 TGCTGGAGACGATC---------ATACA-----GAAAGAGTTTCCGGAAG    610

BSNT_03383___    608 AAGAGATATTA----GA-AGATTG----------TTTTAAAAAAGCGAAA    642
                     .|.||...|.|    || ||.|.|          ||.||||.||||.|  
BL02784___hep    611 GACAGGCTTCATGCGGACAGCTGGCTGCTGCGGCTTATAAAGAAGCCA--    658

BSNT_03383___    643 AACAGCATTG---------AGTCACTT----------CTGCC-TCTAAA-    671
                        ||| |||         ||||.|||          |.||| ||.||| 
BL02784___hep    659 ---AGC-TTGCGATCAACCAGTCGCTTGCCAAAAAGCCCGCCGTCCAAAA    704

BSNT_03383___    672 -----TTCACCTATTCAGAACATTTTAATAAACCGTCTG-AAGACAATCA    715
                          |||                    |.||.||.||| |.||.|.||.
BL02784___hep    705 ATGGCTTC--------------------TGAAACGCCTGCAGGAAATTCG    734

BSNT_03383___    716 GCC--AAGATCAAACCTATCATCAGAAAGTGGAAGAAGGGTAA    756
                     |||  ||.|.|.|||.|||||||||||||||||||||||||||
BL02784___hep    735 GCCTGAAAAACGAACTTATCATCAGAAAGTGGAAGAAGGGTAA    777


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